Experiment: Vancomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_688 and Pf6N2E2_689 are separated by 198 nucleotides Pf6N2E2_689 and Pf6N2E2_690 are separated by 259 nucleotides
Pf6N2E2_688 - Transcriptional regulator, LysR family, at 794,164 to 795,087
_688
Pf6N2E2_689 - FIG00956189: hypothetical protein, at 795,286 to 795,780
_689
Pf6N2E2_690 - Transcriptional regulator, LysR family, at 796,040 to 796,936
_690
Position (kb) 795
796 Strain fitness (log2 ratio) -1
0
1
2 at 794.374 kb on + strand, within Pf6N2E2_688 at 794.374 kb on + strand, within Pf6N2E2_688 at 794.375 kb on - strand, within Pf6N2E2_688 at 794.375 kb on - strand, within Pf6N2E2_688 at 794.485 kb on + strand, within Pf6N2E2_688 at 794.485 kb on + strand, within Pf6N2E2_688 at 794.485 kb on + strand, within Pf6N2E2_688 at 794.485 kb on + strand, within Pf6N2E2_688 at 794.486 kb on - strand, within Pf6N2E2_688 at 794.486 kb on - strand, within Pf6N2E2_688 at 794.486 kb on - strand, within Pf6N2E2_688 at 794.486 kb on - strand, within Pf6N2E2_688 at 794.692 kb on + strand, within Pf6N2E2_688 at 794.693 kb on - strand, within Pf6N2E2_688 at 794.822 kb on + strand, within Pf6N2E2_688 at 794.839 kb on + strand, within Pf6N2E2_688 at 794.839 kb on + strand, within Pf6N2E2_688 at 794.839 kb on + strand, within Pf6N2E2_688 at 794.839 kb on + strand, within Pf6N2E2_688 at 794.839 kb on + strand, within Pf6N2E2_688 at 794.840 kb on - strand at 794.840 kb on - strand, within Pf6N2E2_688 at 794.840 kb on - strand, within Pf6N2E2_688 at 794.840 kb on - strand, within Pf6N2E2_688 at 794.908 kb on + strand, within Pf6N2E2_688 at 794.909 kb on - strand, within Pf6N2E2_688 at 794.951 kb on + strand, within Pf6N2E2_688 at 794.952 kb on - strand, within Pf6N2E2_688 at 795.001 kb on + strand at 795.017 kb on - strand at 795.017 kb on - strand at 795.116 kb on + strand at 795.216 kb on - strand at 795.427 kb on + strand, within Pf6N2E2_689 at 795.427 kb on + strand, within Pf6N2E2_689 at 795.548 kb on + strand, within Pf6N2E2_689 at 795.548 kb on + strand, within Pf6N2E2_689 at 795.740 kb on + strand at 795.740 kb on + strand at 795.740 kb on + strand at 795.741 kb on - strand at 795.741 kb on - strand at 795.741 kb on - strand at 795.755 kb on + strand at 795.755 kb on + strand at 795.755 kb on + strand at 795.756 kb on - strand at 795.756 kb on - strand at 795.756 kb on - strand at 795.756 kb on - strand at 795.820 kb on + strand at 795.821 kb on - strand at 795.821 kb on - strand at 796.023 kb on + strand at 796.353 kb on + strand, within Pf6N2E2_690 at 796.353 kb on + strand, within Pf6N2E2_690 at 796.353 kb on + strand, within Pf6N2E2_690 at 796.354 kb on - strand, within Pf6N2E2_690 at 796.354 kb on - strand, within Pf6N2E2_690 at 796.354 kb on - strand, within Pf6N2E2_690 at 796.437 kb on - strand, within Pf6N2E2_690 at 796.437 kb on - strand, within Pf6N2E2_690 at 796.545 kb on + strand, within Pf6N2E2_690 at 796.546 kb on - strand, within Pf6N2E2_690 at 796.546 kb on - strand, within Pf6N2E2_690 at 796.627 kb on - strand, within Pf6N2E2_690
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml remove 794,374 + Pf6N2E2_688 0.23 +0.8 794,374 + Pf6N2E2_688 0.23 +0.2 794,375 - Pf6N2E2_688 0.23 +0.2 794,375 - Pf6N2E2_688 0.23 -1.1 794,485 + Pf6N2E2_688 0.35 +1.4 794,485 + Pf6N2E2_688 0.35 -0.1 794,485 + Pf6N2E2_688 0.35 -0.4 794,485 + Pf6N2E2_688 0.35 +1.6 794,486 - Pf6N2E2_688 0.35 -0.8 794,486 - Pf6N2E2_688 0.35 -0.4 794,486 - Pf6N2E2_688 0.35 +1.3 794,486 - Pf6N2E2_688 0.35 +0.5 794,692 + Pf6N2E2_688 0.57 +0.2 794,693 - Pf6N2E2_688 0.57 +0.3 794,822 + Pf6N2E2_688 0.71 -1.0 794,839 + Pf6N2E2_688 0.73 -0.8 794,839 + Pf6N2E2_688 0.73 +2.2 794,839 + Pf6N2E2_688 0.73 +0.1 794,839 + Pf6N2E2_688 0.73 -1.5 794,839 + Pf6N2E2_688 0.73 -1.1 794,840 - -0.1 794,840 - Pf6N2E2_688 0.73 -0.2 794,840 - Pf6N2E2_688 0.73 +1.1 794,840 - Pf6N2E2_688 0.73 -0.0 794,908 + Pf6N2E2_688 0.81 +2.7 794,909 - Pf6N2E2_688 0.81 +0.1 794,951 + Pf6N2E2_688 0.85 +0.1 794,952 - Pf6N2E2_688 0.85 -0.4 795,001 + +0.5 795,017 - +0.1 795,017 - -0.1 795,116 + +0.9 795,216 - -0.4 795,427 + Pf6N2E2_689 0.28 -0.9 795,427 + Pf6N2E2_689 0.28 -0.1 795,548 + Pf6N2E2_689 0.53 -0.6 795,548 + Pf6N2E2_689 0.53 -1.5 795,740 + +0.3 795,740 + -0.1 795,740 + -1.3 795,741 - -1.1 795,741 - -0.2 795,741 - +0.7 795,755 + +1.9 795,755 + +0.3 795,755 + +1.3 795,756 - -1.7 795,756 - +0.7 795,756 - +0.3 795,756 - +0.1 795,820 + +0.3 795,821 - -1.7 795,821 - -0.1 796,023 + -0.6 796,353 + Pf6N2E2_690 0.35 +1.3 796,353 + Pf6N2E2_690 0.35 -1.3 796,353 + Pf6N2E2_690 0.35 +1.9 796,354 - Pf6N2E2_690 0.35 +1.0 796,354 - Pf6N2E2_690 0.35 +0.3 796,354 - Pf6N2E2_690 0.35 +1.1 796,437 - Pf6N2E2_690 0.44 +0.9 796,437 - Pf6N2E2_690 0.44 +0.1 796,545 + Pf6N2E2_690 0.56 -0.5 796,546 - Pf6N2E2_690 0.56 -0.1 796,546 - Pf6N2E2_690 0.56 +0.1 796,627 - Pf6N2E2_690 0.65 -0.6
Or see this region's nucleotide sequence