Experiment: Vancomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_583 and Pf6N2E2_584 are separated by 4 nucleotides Pf6N2E2_584 and Pf6N2E2_585 overlap by 4 nucleotides
Pf6N2E2_583 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 658,464 to 659,537
_583
Pf6N2E2_584 - ABC transporter, periplasmic substrate-binding protein, at 659,542 to 661,395
_584
Pf6N2E2_585 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 661,392 to 663,206
_585
Position (kb) 659
660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 658.741 kb on + strand, within Pf6N2E2_583 at 658.741 kb on + strand, within Pf6N2E2_583 at 658.742 kb on - strand, within Pf6N2E2_583 at 658.789 kb on + strand, within Pf6N2E2_583 at 658.790 kb on - strand, within Pf6N2E2_583 at 658.790 kb on - strand, within Pf6N2E2_583 at 658.790 kb on - strand, within Pf6N2E2_583 at 658.790 kb on - strand, within Pf6N2E2_583 at 658.894 kb on + strand, within Pf6N2E2_583 at 658.894 kb on + strand, within Pf6N2E2_583 at 658.894 kb on + strand, within Pf6N2E2_583 at 658.972 kb on + strand, within Pf6N2E2_583 at 658.972 kb on + strand, within Pf6N2E2_583 at 658.973 kb on - strand, within Pf6N2E2_583 at 659.122 kb on + strand, within Pf6N2E2_583 at 659.122 kb on + strand, within Pf6N2E2_583 at 659.122 kb on + strand, within Pf6N2E2_583 at 659.122 kb on + strand, within Pf6N2E2_583 at 659.123 kb on - strand, within Pf6N2E2_583 at 659.226 kb on + strand, within Pf6N2E2_583 at 659.227 kb on - strand, within Pf6N2E2_583 at 659.227 kb on - strand, within Pf6N2E2_583 at 659.236 kb on + strand, within Pf6N2E2_583 at 659.236 kb on + strand, within Pf6N2E2_583 at 659.287 kb on + strand, within Pf6N2E2_583 at 659.287 kb on + strand, within Pf6N2E2_583 at 659.288 kb on - strand, within Pf6N2E2_583 at 659.288 kb on - strand, within Pf6N2E2_583 at 659.291 kb on + strand, within Pf6N2E2_583 at 659.291 kb on + strand, within Pf6N2E2_583 at 659.291 kb on + strand, within Pf6N2E2_583 at 659.291 kb on + strand, within Pf6N2E2_583 at 659.291 kb on + strand, within Pf6N2E2_583 at 659.292 kb on - strand, within Pf6N2E2_583 at 659.292 kb on - strand, within Pf6N2E2_583 at 659.292 kb on - strand, within Pf6N2E2_583 at 659.525 kb on + strand at 659.525 kb on + strand at 659.525 kb on + strand at 659.526 kb on - strand at 659.527 kb on + strand at 659.528 kb on - strand at 659.593 kb on + strand at 659.593 kb on + strand at 659.593 kb on + strand at 659.593 kb on + strand at 659.594 kb on - strand at 659.594 kb on - strand at 659.651 kb on + strand at 659.652 kb on - strand at 659.732 kb on + strand, within Pf6N2E2_584 at 659.732 kb on + strand, within Pf6N2E2_584 at 659.733 kb on - strand, within Pf6N2E2_584 at 659.733 kb on - strand, within Pf6N2E2_584 at 659.733 kb on - strand at 659.733 kb on - strand, within Pf6N2E2_584 at 659.733 kb on - strand, within Pf6N2E2_584 at 659.733 kb on - strand, within Pf6N2E2_584 at 659.736 kb on - strand, within Pf6N2E2_584 at 659.776 kb on + strand, within Pf6N2E2_584 at 660.364 kb on + strand, within Pf6N2E2_584 at 660.364 kb on + strand, within Pf6N2E2_584 at 660.365 kb on - strand, within Pf6N2E2_584 at 660.365 kb on - strand, within Pf6N2E2_584 at 660.365 kb on - strand, within Pf6N2E2_584 at 660.421 kb on + strand, within Pf6N2E2_584 at 660.452 kb on + strand, within Pf6N2E2_584 at 660.453 kb on - strand, within Pf6N2E2_584 at 660.536 kb on + strand, within Pf6N2E2_584 at 660.536 kb on + strand, within Pf6N2E2_584 at 660.629 kb on + strand, within Pf6N2E2_584 at 660.629 kb on + strand, within Pf6N2E2_584 at 660.629 kb on + strand, within Pf6N2E2_584 at 660.630 kb on - strand, within Pf6N2E2_584 at 660.630 kb on - strand, within Pf6N2E2_584 at 660.630 kb on - strand, within Pf6N2E2_584 at 660.630 kb on - strand, within Pf6N2E2_584 at 660.644 kb on - strand, within Pf6N2E2_584 at 660.654 kb on + strand, within Pf6N2E2_584 at 660.692 kb on + strand, within Pf6N2E2_584 at 660.692 kb on + strand, within Pf6N2E2_584 at 660.692 kb on + strand, within Pf6N2E2_584 at 660.692 kb on + strand, within Pf6N2E2_584 at 660.693 kb on - strand, within Pf6N2E2_584 at 660.693 kb on - strand, within Pf6N2E2_584 at 660.700 kb on + strand, within Pf6N2E2_584 at 660.861 kb on + strand, within Pf6N2E2_584 at 660.861 kb on + strand, within Pf6N2E2_584 at 660.929 kb on + strand, within Pf6N2E2_584 at 660.933 kb on - strand, within Pf6N2E2_584 at 661.041 kb on - strand, within Pf6N2E2_584 at 661.041 kb on - strand, within Pf6N2E2_584 at 661.097 kb on + strand, within Pf6N2E2_584 at 661.142 kb on + strand, within Pf6N2E2_584 at 661.304 kb on + strand at 661.304 kb on + strand at 661.305 kb on - strand at 661.444 kb on + strand at 661.444 kb on + strand at 661.444 kb on + strand at 661.445 kb on - strand at 661.481 kb on - strand at 661.495 kb on + strand at 661.495 kb on + strand at 661.496 kb on - strand at 661.496 kb on - strand at 661.504 kb on + strand at 661.522 kb on + strand at 661.523 kb on - strand at 661.643 kb on - strand, within Pf6N2E2_585 at 661.643 kb on - strand, within Pf6N2E2_585 at 661.685 kb on - strand, within Pf6N2E2_585 at 661.771 kb on + strand, within Pf6N2E2_585 at 661.772 kb on - strand, within Pf6N2E2_585 at 661.772 kb on - strand, within Pf6N2E2_585 at 661.834 kb on + strand, within Pf6N2E2_585 at 661.834 kb on + strand, within Pf6N2E2_585 at 661.835 kb on - strand, within Pf6N2E2_585 at 661.835 kb on - strand, within Pf6N2E2_585 at 661.835 kb on - strand, within Pf6N2E2_585 at 661.835 kb on - strand, within Pf6N2E2_585 at 662.122 kb on + strand, within Pf6N2E2_585 at 662.123 kb on - strand, within Pf6N2E2_585 at 662.123 kb on - strand, within Pf6N2E2_585 at 662.140 kb on + strand, within Pf6N2E2_585 at 662.141 kb on - strand, within Pf6N2E2_585 at 662.141 kb on - strand, within Pf6N2E2_585 at 662.205 kb on + strand, within Pf6N2E2_585 at 662.206 kb on - strand, within Pf6N2E2_585 at 662.295 kb on + strand, within Pf6N2E2_585 at 662.295 kb on + strand, within Pf6N2E2_585 at 662.296 kb on - strand, within Pf6N2E2_585 at 662.296 kb on - strand, within Pf6N2E2_585 at 662.362 kb on + strand, within Pf6N2E2_585 at 662.362 kb on + strand, within Pf6N2E2_585 at 662.362 kb on + strand, within Pf6N2E2_585
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml remove 658,741 + Pf6N2E2_583 0.26 -2.6 658,741 + Pf6N2E2_583 0.26 -2.5 658,742 - Pf6N2E2_583 0.26 -2.1 658,789 + Pf6N2E2_583 0.30 -0.8 658,790 - Pf6N2E2_583 0.30 -0.1 658,790 - Pf6N2E2_583 0.30 -1.6 658,790 - Pf6N2E2_583 0.30 -2.4 658,790 - Pf6N2E2_583 0.30 -0.7 658,894 + Pf6N2E2_583 0.40 -1.6 658,894 + Pf6N2E2_583 0.40 +0.4 658,894 + Pf6N2E2_583 0.40 -0.7 658,972 + Pf6N2E2_583 0.47 -2.7 658,972 + Pf6N2E2_583 0.47 -2.5 658,973 - Pf6N2E2_583 0.47 +0.5 659,122 + Pf6N2E2_583 0.61 -2.6 659,122 + Pf6N2E2_583 0.61 -0.0 659,122 + Pf6N2E2_583 0.61 +0.3 659,122 + Pf6N2E2_583 0.61 -1.9 659,123 - Pf6N2E2_583 0.61 +1.7 659,226 + Pf6N2E2_583 0.71 -0.8 659,227 - Pf6N2E2_583 0.71 -1.2 659,227 - Pf6N2E2_583 0.71 -1.5 659,236 + Pf6N2E2_583 0.72 -1.6 659,236 + Pf6N2E2_583 0.72 -1.4 659,287 + Pf6N2E2_583 0.77 +0.2 659,287 + Pf6N2E2_583 0.77 -2.1 659,288 - Pf6N2E2_583 0.77 -2.9 659,288 - Pf6N2E2_583 0.77 -2.7 659,291 + Pf6N2E2_583 0.77 -0.5 659,291 + Pf6N2E2_583 0.77 -0.5 659,291 + Pf6N2E2_583 0.77 -1.6 659,291 + Pf6N2E2_583 0.77 -2.3 659,291 + Pf6N2E2_583 0.77 +0.9 659,292 - Pf6N2E2_583 0.77 +0.9 659,292 - Pf6N2E2_583 0.77 -1.5 659,292 - Pf6N2E2_583 0.77 -0.4 659,525 + -0.5 659,525 + -1.3 659,525 + -0.5 659,526 - -2.5 659,527 + -0.9 659,528 - -0.8 659,593 + +0.1 659,593 + +0.5 659,593 + -1.1 659,593 + -0.8 659,594 - +0.5 659,594 - +1.1 659,651 + -0.5 659,652 - -1.7 659,732 + Pf6N2E2_584 0.10 -1.1 659,732 + Pf6N2E2_584 0.10 -0.1 659,733 - Pf6N2E2_584 0.10 -0.9 659,733 - Pf6N2E2_584 0.10 -0.7 659,733 - -0.1 659,733 - Pf6N2E2_584 0.10 +0.1 659,733 - Pf6N2E2_584 0.10 -0.7 659,733 - Pf6N2E2_584 0.10 -0.5 659,736 - Pf6N2E2_584 0.10 -1.5 659,776 + Pf6N2E2_584 0.13 +0.8 660,364 + Pf6N2E2_584 0.44 -0.7 660,364 + Pf6N2E2_584 0.44 -1.1 660,365 - Pf6N2E2_584 0.44 +0.9 660,365 - Pf6N2E2_584 0.44 -2.6 660,365 - Pf6N2E2_584 0.44 +0.4 660,421 + Pf6N2E2_584 0.47 -0.9 660,452 + Pf6N2E2_584 0.49 +0.3 660,453 - Pf6N2E2_584 0.49 -0.3 660,536 + Pf6N2E2_584 0.54 -2.0 660,536 + Pf6N2E2_584 0.54 -0.9 660,629 + Pf6N2E2_584 0.59 -1.5 660,629 + Pf6N2E2_584 0.59 -2.6 660,629 + Pf6N2E2_584 0.59 -1.1 660,630 - Pf6N2E2_584 0.59 +0.4 660,630 - Pf6N2E2_584 0.59 -1.6 660,630 - Pf6N2E2_584 0.59 -1.7 660,630 - Pf6N2E2_584 0.59 -0.9 660,644 - Pf6N2E2_584 0.59 -0.1 660,654 + Pf6N2E2_584 0.60 -1.3 660,692 + Pf6N2E2_584 0.62 -2.7 660,692 + Pf6N2E2_584 0.62 -0.1 660,692 + Pf6N2E2_584 0.62 -2.5 660,692 + Pf6N2E2_584 0.62 -0.4 660,693 - Pf6N2E2_584 0.62 -0.3 660,693 - Pf6N2E2_584 0.62 -0.1 660,700 + Pf6N2E2_584 0.62 -0.3 660,861 + Pf6N2E2_584 0.71 -0.8 660,861 + Pf6N2E2_584 0.71 -2.8 660,929 + Pf6N2E2_584 0.75 -0.5 660,933 - Pf6N2E2_584 0.75 -1.4 661,041 - Pf6N2E2_584 0.81 -0.1 661,041 - Pf6N2E2_584 0.81 -0.4 661,097 + Pf6N2E2_584 0.84 -3.1 661,142 + Pf6N2E2_584 0.86 -0.3 661,304 + +0.9 661,304 + +0.2 661,305 - -0.8 661,444 + -1.9 661,444 + -1.2 661,444 + -0.5 661,445 - +1.6 661,481 - +0.8 661,495 + -1.0 661,495 + -1.7 661,496 - +1.7 661,496 - +0.2 661,504 + -0.6 661,522 + -1.3 661,523 - +1.2 661,643 - Pf6N2E2_585 0.14 +1.7 661,643 - Pf6N2E2_585 0.14 +0.2 661,685 - Pf6N2E2_585 0.16 +0.2 661,771 + Pf6N2E2_585 0.21 +0.9 661,772 - Pf6N2E2_585 0.21 -0.7 661,772 - Pf6N2E2_585 0.21 +0.7 661,834 + Pf6N2E2_585 0.24 +1.2 661,834 + Pf6N2E2_585 0.24 -1.1 661,835 - Pf6N2E2_585 0.24 -0.5 661,835 - Pf6N2E2_585 0.24 -0.9 661,835 - Pf6N2E2_585 0.24 -0.4 661,835 - Pf6N2E2_585 0.24 +0.5 662,122 + Pf6N2E2_585 0.40 -0.5 662,123 - Pf6N2E2_585 0.40 -0.1 662,123 - Pf6N2E2_585 0.40 -2.0 662,140 + Pf6N2E2_585 0.41 -0.1 662,141 - Pf6N2E2_585 0.41 -1.7 662,141 - Pf6N2E2_585 0.41 -0.6 662,205 + Pf6N2E2_585 0.45 -0.5 662,206 - Pf6N2E2_585 0.45 +1.0 662,295 + Pf6N2E2_585 0.50 -1.7 662,295 + Pf6N2E2_585 0.50 +0.0 662,296 - Pf6N2E2_585 0.50 +0.1 662,296 - Pf6N2E2_585 0.50 +1.5 662,362 + Pf6N2E2_585 0.53 -0.1 662,362 + Pf6N2E2_585 0.53 -1.7 662,362 + Pf6N2E2_585 0.53 -0.3
Or see this region's nucleotide sequence