Experiment: Vancomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5756 and Pf6N2E2_5757 are separated by 953 nucleotides Pf6N2E2_5757 and Pf6N2E2_5758 are separated by 10 nucleotides Pf6N2E2_5758 and Pf6N2E2_5759 are separated by 80 nucleotides
Pf6N2E2_5756 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 6,569,229 to 6,569,453
_5756
Pf6N2E2_5757 - hypothetical protein, at 6,570,407 to 6,570,595
_5757
Pf6N2E2_5758 - FIG00957314: hypothetical protein, at 6,570,606 to 6,570,857
_5758
Pf6N2E2_5759 - DNA recombination protein RmuC, at 6,570,938 to 6,572,431
_5759
Position (kb)
6570
6571 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 6569.423 kb on + strand, within Pf6N2E2_5756 at 6569.457 kb on - strand at 6569.483 kb on + strand at 6569.484 kb on - strand at 6569.501 kb on - strand at 6569.576 kb on + strand at 6569.576 kb on + strand at 6569.577 kb on - strand at 6569.577 kb on - strand at 6569.577 kb on - strand at 6569.577 kb on - strand at 6569.578 kb on + strand at 6569.578 kb on + strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.605 kb on + strand at 6569.606 kb on - strand at 6569.609 kb on + strand at 6569.609 kb on + strand at 6569.609 kb on + strand at 6569.610 kb on - strand at 6569.610 kb on - strand at 6569.610 kb on - strand at 6569.610 kb on - strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.700 kb on - strand at 6569.755 kb on + strand at 6569.862 kb on + strand at 6569.862 kb on + strand at 6569.863 kb on - strand at 6569.863 kb on - strand at 6569.866 kb on - strand at 6569.922 kb on + strand at 6569.938 kb on - strand at 6570.089 kb on + strand at 6570.089 kb on + strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.216 kb on + strand at 6570.216 kb on + strand at 6570.217 kb on - strand at 6570.446 kb on + strand, within Pf6N2E2_5757 at 6570.496 kb on + strand, within Pf6N2E2_5757 at 6570.497 kb on - strand, within Pf6N2E2_5757 at 6570.497 kb on - strand, within Pf6N2E2_5757 at 6570.519 kb on - strand, within Pf6N2E2_5757 at 6570.519 kb on - strand, within Pf6N2E2_5757 at 6570.534 kb on - strand, within Pf6N2E2_5757 at 6570.564 kb on - strand, within Pf6N2E2_5757 at 6570.564 kb on - strand, within Pf6N2E2_5757 at 6570.600 kb on - strand at 6570.651 kb on - strand, within Pf6N2E2_5758 at 6570.682 kb on + strand, within Pf6N2E2_5758 at 6570.911 kb on - strand at 6570.911 kb on - strand at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.523 kb on + strand, within Pf6N2E2_5759
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml remove 6,569,423 + Pf6N2E2_5756 0.86 +1.4 6,569,457 - +0.6 6,569,483 + -0.3 6,569,484 - -0.1 6,569,501 - +0.6 6,569,576 + +0.5 6,569,576 + +0.1 6,569,577 - -1.2 6,569,577 - -1.1 6,569,577 - +0.2 6,569,577 - -0.4 6,569,578 + +1.1 6,569,578 + +1.5 6,569,579 - -0.5 6,569,579 - -0.7 6,569,579 - +1.1 6,569,579 - -1.1 6,569,579 - -0.1 6,569,579 - -1.4 6,569,579 - -3.7 6,569,579 - -0.7 6,569,579 - +0.4 6,569,579 - +0.2 6,569,605 + -0.3 6,569,606 - -1.2 6,569,609 + +1.3 6,569,609 + -0.1 6,569,609 + +0.5 6,569,610 - -0.3 6,569,610 - -2.4 6,569,610 - +0.1 6,569,610 - -0.5 6,569,613 + -0.3 6,569,613 + +1.1 6,569,613 + -0.7 6,569,613 + +0.5 6,569,613 + -0.1 6,569,614 - -1.2 6,569,614 - -1.9 6,569,614 - -0.8 6,569,614 - -0.5 6,569,614 - -0.8 6,569,614 - -1.5 6,569,614 - -0.6 6,569,614 - -1.3 6,569,700 - +0.1 6,569,755 + +1.3 6,569,862 + -0.7 6,569,862 + +0.6 6,569,863 - -0.2 6,569,863 - -0.1 6,569,866 - +0.3 6,569,922 + +0.3 6,569,938 - -0.8 6,570,089 + -1.3 6,570,089 + -0.8 6,570,090 - +1.7 6,570,090 - -0.1 6,570,090 - -0.1 6,570,090 - -0.2 6,570,090 - +4.0 6,570,090 - -1.3 6,570,090 - +0.6 6,570,090 - -0.8 6,570,198 + +0.3 6,570,198 + +0.9 6,570,198 + -0.2 6,570,198 + -0.7 6,570,198 + -1.1 6,570,199 - -0.3 6,570,199 - -0.1 6,570,199 - -0.6 6,570,199 - +0.9 6,570,199 - +0.1 6,570,199 - -0.8 6,570,199 - +1.0 6,570,199 - -0.7 6,570,199 - +0.2 6,570,216 + -0.4 6,570,216 + -0.3 6,570,217 - -1.7 6,570,446 + Pf6N2E2_5757 0.21 +0.7 6,570,496 + Pf6N2E2_5757 0.47 -1.3 6,570,497 - Pf6N2E2_5757 0.48 -1.1 6,570,497 - Pf6N2E2_5757 0.48 -1.1 6,570,519 - Pf6N2E2_5757 0.59 -2.2 6,570,519 - Pf6N2E2_5757 0.59 -1.1 6,570,534 - Pf6N2E2_5757 0.67 -0.1 6,570,564 - Pf6N2E2_5757 0.83 -0.7 6,570,564 - Pf6N2E2_5757 0.83 -1.9 6,570,600 - -2.2 6,570,651 - Pf6N2E2_5758 0.18 -0.9 6,570,682 + Pf6N2E2_5758 0.30 -1.7 6,570,911 - -0.1 6,570,911 - -2.5 6,571,523 + Pf6N2E2_5759 0.39 -2.8 6,571,523 + Pf6N2E2_5759 0.39 +0.4 6,571,523 + Pf6N2E2_5759 0.39 +0.4
Or see this region's nucleotide sequence