Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5525

Experiment: Vancomycin 0.24 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5524 and Pf6N2E2_5525 are separated by 888 nucleotidesPf6N2E2_5525 and Pf6N2E2_5526 are separated by 3 nucleotidesPf6N2E2_5526 and Pf6N2E2_5527 are separated by 78 nucleotides Pf6N2E2_5524 - Outer membrane porin, OprD family, at 6,343,630 to 6,344,883 _5524 Pf6N2E2_5525 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 6,345,772 to 6,346,197 _5525 Pf6N2E2_5526 - Protein SlyX, at 6,346,201 to 6,346,407 _5526 Pf6N2E2_5527 - Cold shock protein CspC, at 6,346,486 to 6,347,091 _5527 Position (kb) 6345 6346 6347Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 6344.788 kb on - strandat 6344.915 kb on - strandat 6344.976 kb on - strandat 6344.976 kb on - strandat 6344.976 kb on - strandat 6344.976 kb on - strandat 6344.977 kb on + strandat 6344.978 kb on - strandat 6344.978 kb on - strandat 6344.978 kb on - strandat 6345.100 kb on + strandat 6345.101 kb on - strandat 6345.101 kb on - strandat 6345.101 kb on - strandat 6345.101 kb on - strandat 6345.101 kb on - strandat 6345.101 kb on - strandat 6345.101 kb on - strandat 6345.101 kb on - strandat 6345.101 kb on - strandat 6345.131 kb on + strandat 6345.132 kb on - strandat 6345.132 kb on - strandat 6345.132 kb on - strandat 6345.132 kb on - strandat 6345.132 kb on - strandat 6345.191 kb on + strandat 6345.191 kb on + strandat 6345.192 kb on - strandat 6345.429 kb on + strandat 6345.469 kb on + strandat 6345.522 kb on + strandat 6345.523 kb on - strandat 6345.523 kb on - strandat 6345.663 kb on + strandat 6345.663 kb on + strandat 6345.724 kb on + strandat 6345.725 kb on - strandat 6345.725 kb on - strandat 6345.725 kb on - strandat 6345.764 kb on + strandat 6345.765 kb on - strandat 6345.765 kb on - strandat 6345.782 kb on + strandat 6345.862 kb on + strand, within Pf6N2E2_5525at 6345.863 kb on - strand, within Pf6N2E2_5525at 6345.897 kb on + strand, within Pf6N2E2_5525at 6345.898 kb on - strand, within Pf6N2E2_5525at 6346.059 kb on + strand, within Pf6N2E2_5525at 6346.060 kb on - strand, within Pf6N2E2_5525at 6346.117 kb on + strand, within Pf6N2E2_5525at 6346.117 kb on + strand, within Pf6N2E2_5525at 6346.117 kb on + strand, within Pf6N2E2_5525at 6346.117 kb on + strand, within Pf6N2E2_5525at 6346.117 kb on + strand, within Pf6N2E2_5525at 6346.117 kb on + strand, within Pf6N2E2_5525at 6346.118 kb on - strand, within Pf6N2E2_5525at 6346.118 kb on - strand, within Pf6N2E2_5525at 6346.118 kb on - strand, within Pf6N2E2_5525at 6346.118 kb on - strand, within Pf6N2E2_5525at 6346.118 kb on - strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.119 kb on + strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.120 kb on - strand, within Pf6N2E2_5525at 6346.402 kb on + strandat 6346.402 kb on + strandat 6346.402 kb on + strandat 6346.403 kb on - strandat 6346.436 kb on + strandat 6346.436 kb on + strandat 6346.669 kb on - strand, within Pf6N2E2_5527at 6346.713 kb on - strand, within Pf6N2E2_5527at 6346.982 kb on + strand, within Pf6N2E2_5527at 6347.006 kb on + strand, within Pf6N2E2_5527at 6347.178 kb on + strandat 6347.193 kb on - strandat 6347.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml
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6,344,788 - -1.0
6,344,915 - +0.2
6,344,976 - -0.3
6,344,976 - -0.4
6,344,976 - +0.1
6,344,976 - +0.1
6,344,977 + -1.1
6,344,978 - +0.6
6,344,978 - -0.0
6,344,978 - -0.1
6,345,100 + +0.8
6,345,101 - -1.0
6,345,101 - -0.2
6,345,101 - +0.9
6,345,101 - -1.0
6,345,101 - -0.5
6,345,101 - +1.0
6,345,101 - -0.5
6,345,101 - -0.4
6,345,101 - -0.0
6,345,131 + +0.1
6,345,132 - +0.1
6,345,132 - -1.2
6,345,132 - -0.7
6,345,132 - -0.2
6,345,132 - +0.2
6,345,191 + +0.8
6,345,191 + -0.2
6,345,192 - -0.0
6,345,429 + -0.3
6,345,469 + +0.5
6,345,522 + +0.9
6,345,523 - -0.4
6,345,523 - +0.1
6,345,663 + -0.4
6,345,663 + -0.3
6,345,724 + -1.8
6,345,725 - +0.6
6,345,725 - +1.4
6,345,725 - +2.3
6,345,764 + +1.5
6,345,765 - +3.3
6,345,765 - +3.6
6,345,782 + +1.9
6,345,862 + Pf6N2E2_5525 0.21 +2.6
6,345,863 - Pf6N2E2_5525 0.21 +2.4
6,345,897 + Pf6N2E2_5525 0.29 +4.0
6,345,898 - Pf6N2E2_5525 0.30 +3.7
6,346,059 + Pf6N2E2_5525 0.67 +3.5
6,346,060 - Pf6N2E2_5525 0.68 +3.0
6,346,117 + Pf6N2E2_5525 0.81 +3.6
6,346,117 + Pf6N2E2_5525 0.81 +3.2
6,346,117 + Pf6N2E2_5525 0.81 +2.4
6,346,117 + Pf6N2E2_5525 0.81 +3.7
6,346,117 + Pf6N2E2_5525 0.81 +3.0
6,346,117 + Pf6N2E2_5525 0.81 +2.0
6,346,118 - Pf6N2E2_5525 0.81 +2.4
6,346,118 - Pf6N2E2_5525 0.81 +3.2
6,346,118 - Pf6N2E2_5525 0.81 +2.6
6,346,118 - Pf6N2E2_5525 0.81 +3.1
6,346,118 - Pf6N2E2_5525 0.81 +3.8
6,346,119 + Pf6N2E2_5525 0.81 +3.7
6,346,119 + Pf6N2E2_5525 0.81 +3.3
6,346,119 + Pf6N2E2_5525 0.81 +3.0
6,346,119 + Pf6N2E2_5525 0.81 +2.9
6,346,119 + Pf6N2E2_5525 0.81 +2.7
6,346,119 + Pf6N2E2_5525 0.81 +2.9
6,346,119 + Pf6N2E2_5525 0.81 +3.6
6,346,119 + Pf6N2E2_5525 0.81 +3.3
6,346,119 + Pf6N2E2_5525 0.81 +2.9
6,346,119 + Pf6N2E2_5525 0.81 +2.5
6,346,119 + Pf6N2E2_5525 0.81 +3.2
6,346,120 - Pf6N2E2_5525 0.82 +2.6
6,346,120 - Pf6N2E2_5525 0.82 +4.3
6,346,120 - Pf6N2E2_5525 0.82 +3.7
6,346,120 - Pf6N2E2_5525 0.82 +2.3
6,346,120 - Pf6N2E2_5525 0.82 +3.0
6,346,120 - Pf6N2E2_5525 0.82 +2.5
6,346,120 - Pf6N2E2_5525 0.82 +2.0
6,346,120 - Pf6N2E2_5525 0.82 +3.8
6,346,120 - Pf6N2E2_5525 0.82 +2.4
6,346,120 - Pf6N2E2_5525 0.82 +2.8
6,346,120 - Pf6N2E2_5525 0.82 +2.6
6,346,120 - Pf6N2E2_5525 0.82 +1.6
6,346,120 - Pf6N2E2_5525 0.82 +1.9
6,346,120 - Pf6N2E2_5525 0.82 +3.4
6,346,402 + -0.1
6,346,402 + +1.8
6,346,402 + +0.4
6,346,403 - +0.7
6,346,436 + -1.1
6,346,436 + +1.5
6,346,669 - Pf6N2E2_5527 0.30 +4.5
6,346,713 - Pf6N2E2_5527 0.37 +2.8
6,346,982 + Pf6N2E2_5527 0.82 +4.8
6,347,006 + Pf6N2E2_5527 0.86 +4.4
6,347,178 + +5.3
6,347,193 - -0.8
6,347,193 - +0.2

Or see this region's nucleotide sequence