Experiment: Vancomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4199 and Pf6N2E2_4200 are separated by 927 nucleotides Pf6N2E2_4200 and Pf6N2E2_4201 are separated by 240 nucleotides
Pf6N2E2_4199 - Chromosomal replication initiator protein DnaA, at 4,887,444 to 4,888,964
_4199
Pf6N2E2_4200 - Ribonuclease P protein component (EC 3.1.26.5), at 4,889,892 to 4,890,089
_4200
Pf6N2E2_4201 - Inner membrane protein translocase component YidC, long form, at 4,890,330 to 4,892,012
_4201
Position (kb)
4889
4890
4891 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4889.040 kb on - strand at 4889.040 kb on - strand at 4889.072 kb on + strand at 4889.073 kb on - strand at 4889.073 kb on - strand at 4889.073 kb on - strand at 4889.272 kb on + strand at 4889.284 kb on + strand at 4889.332 kb on + strand at 4889.358 kb on + strand at 4889.371 kb on + strand at 4889.371 kb on + strand at 4889.377 kb on + strand at 4889.377 kb on + strand at 4889.377 kb on + strand at 4889.377 kb on + strand at 4889.377 kb on + strand at 4889.379 kb on + strand at 4889.383 kb on + strand at 4889.383 kb on + strand at 4889.383 kb on + strand at 4889.383 kb on + strand at 4889.422 kb on + strand at 4889.422 kb on + strand at 4889.422 kb on + strand at 4889.422 kb on + strand at 4889.422 kb on + strand at 4890.070 kb on + strand at 4890.087 kb on + strand at 4890.115 kb on + strand at 4890.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml remove 4,889,040 - +0.7 4,889,040 - -0.6 4,889,072 + -2.1 4,889,073 - -1.4 4,889,073 - -1.3 4,889,073 - -2.9 4,889,272 + -0.0 4,889,284 + -1.3 4,889,332 + -0.4 4,889,358 + +0.7 4,889,371 + +0.1 4,889,371 + -0.4 4,889,377 + -0.9 4,889,377 + -0.4 4,889,377 + -0.4 4,889,377 + -0.9 4,889,377 + -0.8 4,889,379 + -1.0 4,889,383 + -0.0 4,889,383 + -0.3 4,889,383 + +0.4 4,889,383 + +0.4 4,889,422 + -1.6 4,889,422 + -1.2 4,889,422 + -0.3 4,889,422 + +0.3 4,889,422 + -1.1 4,890,070 + +2.7 4,890,087 + -0.5 4,890,115 + -0.3 4,890,297 + +0.2
Or see this region's nucleotide sequence