Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3666

Experiment: Vancomycin 0.24 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3665 and Pf6N2E2_3666 overlap by 1 nucleotidesPf6N2E2_3666 and Pf6N2E2_3667 overlap by 4 nucleotidesPf6N2E2_3667 and Pf6N2E2_3668 overlap by 1 nucleotides Pf6N2E2_3665 - serine/threonine protein kinase, at 4,267,394 to 4,268,848 _3665 Pf6N2E2_3666 - InaA protein, at 4,268,848 to 4,269,600 _3666 Pf6N2E2_3667 - Heptose kinase WapQ, eukaryotic type, at 4,269,597 to 4,270,331 _3667 Pf6N2E2_3668 - Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase, at 4,270,331 to 4,271,137 _3668 Position (kb) 4268 4269 4270Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4267.980 kb on - strand, within Pf6N2E2_3665at 4269.303 kb on - strand, within Pf6N2E2_3666at 4269.303 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.414 kb on - strand, within Pf6N2E2_3666at 4269.435 kb on - strand, within Pf6N2E2_3666at 4269.435 kb on - strand, within Pf6N2E2_3666at 4269.719 kb on - strand, within Pf6N2E2_3667at 4269.719 kb on - strand, within Pf6N2E2_3667at 4270.184 kb on - strand, within Pf6N2E2_3667

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml
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4,267,980 - Pf6N2E2_3665 0.40 +0.6
4,269,303 - Pf6N2E2_3666 0.60 -3.4
4,269,303 - Pf6N2E2_3666 0.60 -3.0
4,269,414 - Pf6N2E2_3666 0.75 -2.2
4,269,414 - Pf6N2E2_3666 0.75 -2.2
4,269,414 - Pf6N2E2_3666 0.75 -3.4
4,269,414 - Pf6N2E2_3666 0.75 -3.2
4,269,435 - Pf6N2E2_3666 0.78 -4.9
4,269,435 - Pf6N2E2_3666 0.78 -1.9
4,269,719 - Pf6N2E2_3667 0.17 +1.1
4,269,719 - Pf6N2E2_3667 0.17 -2.0
4,270,184 - Pf6N2E2_3667 0.80 +0.1

Or see this region's nucleotide sequence