Experiment: Vancomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1470 and Pf6N2E2_1471 are separated by 100 nucleotides Pf6N2E2_1471 and Pf6N2E2_1472 are separated by 18 nucleotides
Pf6N2E2_1470 - Transcriptional regulator, LysR family, at 1,722,576 to 1,722,734
_1470
Pf6N2E2_1471 - Dienelactone hydrolase and related enzymes, at 1,722,835 to 1,723,065
_1471
Pf6N2E2_1472 - Cytochrome b561, at 1,723,084 to 1,723,635
_1472
Position (kb)
1722
1723 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1721.654 kb on + strand at 1721.655 kb on - strand at 1722.186 kb on + strand at 1722.358 kb on + strand at 1722.476 kb on - strand at 1722.503 kb on - strand at 1722.539 kb on + strand at 1722.539 kb on + strand at 1722.540 kb on - strand at 1722.619 kb on + strand, within Pf6N2E2_1470 at 1722.619 kb on + strand, within Pf6N2E2_1470 at 1722.654 kb on - strand, within Pf6N2E2_1470 at 1722.709 kb on + strand, within Pf6N2E2_1470 at 1722.709 kb on + strand, within Pf6N2E2_1470 at 1722.710 kb on - strand, within Pf6N2E2_1470 at 1722.887 kb on + strand, within Pf6N2E2_1471 at 1722.888 kb on - strand, within Pf6N2E2_1471 at 1722.938 kb on - strand, within Pf6N2E2_1471 at 1722.938 kb on - strand, within Pf6N2E2_1471 at 1722.938 kb on - strand, within Pf6N2E2_1471 at 1722.938 kb on - strand, within Pf6N2E2_1471 at 1723.000 kb on + strand, within Pf6N2E2_1471 at 1723.001 kb on - strand, within Pf6N2E2_1471 at 1723.123 kb on - strand at 1723.140 kb on - strand, within Pf6N2E2_1472 at 1723.201 kb on + strand, within Pf6N2E2_1472 at 1723.202 kb on - strand, within Pf6N2E2_1472 at 1723.214 kb on + strand at 1723.215 kb on - strand, within Pf6N2E2_1472 at 1723.215 kb on - strand, within Pf6N2E2_1472 at 1723.346 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.550 kb on + strand, within Pf6N2E2_1472 at 1723.551 kb on - strand, within Pf6N2E2_1472
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml remove 1,721,654 + +0.5 1,721,655 - +0.6 1,722,186 + -0.4 1,722,358 + -0.4 1,722,476 - -1.0 1,722,503 - -1.5 1,722,539 + -2.1 1,722,539 + +0.6 1,722,540 - -0.2 1,722,619 + Pf6N2E2_1470 0.27 -0.5 1,722,619 + Pf6N2E2_1470 0.27 -1.1 1,722,654 - Pf6N2E2_1470 0.49 -0.9 1,722,709 + Pf6N2E2_1470 0.84 -2.9 1,722,709 + Pf6N2E2_1470 0.84 -0.1 1,722,710 - Pf6N2E2_1470 0.84 -1.7 1,722,887 + Pf6N2E2_1471 0.23 -0.9 1,722,888 - Pf6N2E2_1471 0.23 -0.2 1,722,938 - Pf6N2E2_1471 0.45 -1.9 1,722,938 - Pf6N2E2_1471 0.45 -0.7 1,722,938 - Pf6N2E2_1471 0.45 -0.1 1,722,938 - Pf6N2E2_1471 0.45 +0.1 1,723,000 + Pf6N2E2_1471 0.71 +0.8 1,723,001 - Pf6N2E2_1471 0.72 +1.2 1,723,123 - -0.3 1,723,140 - Pf6N2E2_1472 0.10 +0.1 1,723,201 + Pf6N2E2_1472 0.21 -0.6 1,723,202 - Pf6N2E2_1472 0.21 -0.3 1,723,214 + +0.9 1,723,215 - Pf6N2E2_1472 0.24 +2.1 1,723,215 - Pf6N2E2_1472 0.24 +0.3 1,723,346 + Pf6N2E2_1472 0.47 +0.2 1,723,550 + Pf6N2E2_1472 0.84 -2.1 1,723,550 + Pf6N2E2_1472 0.84 -1.4 1,723,550 + Pf6N2E2_1472 0.84 +0.9 1,723,550 + Pf6N2E2_1472 0.84 -2.7 1,723,551 - Pf6N2E2_1472 0.85 -1.9
Or see this region's nucleotide sequence