Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1470

Experiment: Vancomycin 0.24 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1470 and Pf6N2E2_1471 are separated by 100 nucleotidesPf6N2E2_1471 and Pf6N2E2_1472 are separated by 18 nucleotides Pf6N2E2_1470 - Transcriptional regulator, LysR family, at 1,722,576 to 1,722,734 _1470 Pf6N2E2_1471 - Dienelactone hydrolase and related enzymes, at 1,722,835 to 1,723,065 _1471 Pf6N2E2_1472 - Cytochrome b561, at 1,723,084 to 1,723,635 _1472 Position (kb) 1722 1723Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1721.654 kb on + strandat 1721.655 kb on - strandat 1722.186 kb on + strandat 1722.358 kb on + strandat 1722.476 kb on - strandat 1722.503 kb on - strandat 1722.539 kb on + strandat 1722.539 kb on + strandat 1722.540 kb on - strandat 1722.619 kb on + strand, within Pf6N2E2_1470at 1722.619 kb on + strand, within Pf6N2E2_1470at 1722.654 kb on - strand, within Pf6N2E2_1470at 1722.709 kb on + strand, within Pf6N2E2_1470at 1722.709 kb on + strand, within Pf6N2E2_1470at 1722.710 kb on - strand, within Pf6N2E2_1470at 1722.887 kb on + strand, within Pf6N2E2_1471at 1722.888 kb on - strand, within Pf6N2E2_1471at 1722.938 kb on - strand, within Pf6N2E2_1471at 1722.938 kb on - strand, within Pf6N2E2_1471at 1722.938 kb on - strand, within Pf6N2E2_1471at 1722.938 kb on - strand, within Pf6N2E2_1471at 1723.000 kb on + strand, within Pf6N2E2_1471at 1723.001 kb on - strand, within Pf6N2E2_1471at 1723.123 kb on - strandat 1723.140 kb on - strand, within Pf6N2E2_1472at 1723.201 kb on + strand, within Pf6N2E2_1472at 1723.202 kb on - strand, within Pf6N2E2_1472at 1723.214 kb on + strandat 1723.215 kb on - strand, within Pf6N2E2_1472at 1723.215 kb on - strand, within Pf6N2E2_1472at 1723.346 kb on + strand, within Pf6N2E2_1472at 1723.550 kb on + strand, within Pf6N2E2_1472at 1723.550 kb on + strand, within Pf6N2E2_1472at 1723.550 kb on + strand, within Pf6N2E2_1472at 1723.550 kb on + strand, within Pf6N2E2_1472at 1723.551 kb on - strand, within Pf6N2E2_1472

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml
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1,721,654 + +0.5
1,721,655 - +0.6
1,722,186 + -0.4
1,722,358 + -0.4
1,722,476 - -1.0
1,722,503 - -1.5
1,722,539 + -2.1
1,722,539 + +0.6
1,722,540 - -0.2
1,722,619 + Pf6N2E2_1470 0.27 -0.5
1,722,619 + Pf6N2E2_1470 0.27 -1.1
1,722,654 - Pf6N2E2_1470 0.49 -0.9
1,722,709 + Pf6N2E2_1470 0.84 -2.9
1,722,709 + Pf6N2E2_1470 0.84 -0.1
1,722,710 - Pf6N2E2_1470 0.84 -1.7
1,722,887 + Pf6N2E2_1471 0.23 -0.9
1,722,888 - Pf6N2E2_1471 0.23 -0.2
1,722,938 - Pf6N2E2_1471 0.45 -1.9
1,722,938 - Pf6N2E2_1471 0.45 -0.7
1,722,938 - Pf6N2E2_1471 0.45 -0.1
1,722,938 - Pf6N2E2_1471 0.45 +0.1
1,723,000 + Pf6N2E2_1471 0.71 +0.8
1,723,001 - Pf6N2E2_1471 0.72 +1.2
1,723,123 - -0.3
1,723,140 - Pf6N2E2_1472 0.10 +0.1
1,723,201 + Pf6N2E2_1472 0.21 -0.6
1,723,202 - Pf6N2E2_1472 0.21 -0.3
1,723,214 + +0.9
1,723,215 - Pf6N2E2_1472 0.24 +2.1
1,723,215 - Pf6N2E2_1472 0.24 +0.3
1,723,346 + Pf6N2E2_1472 0.47 +0.2
1,723,550 + Pf6N2E2_1472 0.84 -2.1
1,723,550 + Pf6N2E2_1472 0.84 -1.4
1,723,550 + Pf6N2E2_1472 0.84 +0.9
1,723,550 + Pf6N2E2_1472 0.84 -2.7
1,723,551 - Pf6N2E2_1472 0.85 -1.9

Or see this region's nucleotide sequence