Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06505 and H281DRAFT_06506 are separated by 219 nucleotides H281DRAFT_06506 and H281DRAFT_06507 are separated by 358 nucleotides
H281DRAFT_06505: H281DRAFT_06505 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 52,483 to 53,229
_06505
H281DRAFT_06506: H281DRAFT_06506 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 53,449 to 54,195
_06506
H281DRAFT_06507: H281DRAFT_06507 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 54,554 to 55,303
_06507
Position (kb) 53
54
55 Strain fitness (log2 ratio) -1
0
1
2 at 52.591 kb on + strand, within H281DRAFT_06505 at 53.014 kb on - strand at 53.372 kb on + strand at 53.761 kb on + strand, within H281DRAFT_06506 at 53.761 kb on + strand, within H281DRAFT_06506 at 53.762 kb on - strand, within H281DRAFT_06506 at 54.121 kb on + strand at 54.194 kb on - strand at 54.293 kb on - strand at 54.409 kb on + strand at 54.412 kb on + strand at 54.509 kb on + strand at 54.785 kb on + strand, within H281DRAFT_06507 at 54.899 kb on + strand, within H281DRAFT_06507 at 54.899 kb on + strand, within H281DRAFT_06507 at 55.169 kb on - strand, within H281DRAFT_06507
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 52,591 + H281DRAFT_06505 0.14 +1.4 53,014 - +2.7 53,372 + +0.5 53,761 + H281DRAFT_06506 0.42 -0.0 53,761 + H281DRAFT_06506 0.42 +1.5 53,762 - H281DRAFT_06506 0.42 +0.7 54,121 + +1.2 54,194 - -0.4 54,293 - -0.1 54,409 + +0.5 54,412 + +0.8 54,509 + +0.1 54,785 + H281DRAFT_06507 0.31 -0.1 54,899 + H281DRAFT_06507 0.46 -1.2 54,899 + H281DRAFT_06507 0.46 +1.3 55,169 - H281DRAFT_06507 0.82 +0.4
Or see this region's nucleotide sequence