Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06375

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06374 and H281DRAFT_06375 are separated by 44 nucleotidesH281DRAFT_06375 and H281DRAFT_06376 are separated by 231 nucleotides H281DRAFT_06374: H281DRAFT_06374 - ATP-binding cassette, subfamily B, at 46,382 to 48,211 _06374 H281DRAFT_06375: H281DRAFT_06375 - hypothetical protein, at 48,256 to 48,483 _06375 H281DRAFT_06376: H281DRAFT_06376 - transcriptional regulator, LysR family, at 48,715 to 49,611 _06376 Position (kb) 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1at 47.643 kb on + strand, within H281DRAFT_06374at 47.643 kb on + strandat 47.943 kb on + strand, within H281DRAFT_06374at 47.943 kb on + strand, within H281DRAFT_06374at 48.156 kb on - strandat 48.377 kb on + strand, within H281DRAFT_06375at 48.378 kb on - strand, within H281DRAFT_06375at 48.378 kb on - strand, within H281DRAFT_06375at 49.129 kb on + strand, within H281DRAFT_06376at 49.130 kb on - strand, within H281DRAFT_06376at 49.378 kb on + strand, within H281DRAFT_06376

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
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47,643 + H281DRAFT_06374 0.69 +0.2
47,643 + +0.8
47,943 + H281DRAFT_06374 0.85 +0.2
47,943 + H281DRAFT_06374 0.85 +0.5
48,156 - +0.3
48,377 + H281DRAFT_06375 0.53 -0.5
48,378 - H281DRAFT_06375 0.54 -2.6
48,378 - H281DRAFT_06375 0.54 +0.0
49,129 + H281DRAFT_06376 0.46 +0.4
49,130 - H281DRAFT_06376 0.46 -0.6
49,378 + H281DRAFT_06376 0.74 -3.4

Or see this region's nucleotide sequence