Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06161 and H281DRAFT_06162 are separated by 8 nucleotides H281DRAFT_06162 and H281DRAFT_06163 overlap by 44 nucleotides H281DRAFT_06163 and H281DRAFT_06164 overlap by 11 nucleotides H281DRAFT_06164 and H281DRAFT_06165 are separated by 356 nucleotides
H281DRAFT_06161: H281DRAFT_06161 - conjugative coupling factor TraD, SXT/TOL subfamily, at 53,749 to 55,992
_06161
H281DRAFT_06162: H281DRAFT_06162 - hypothetical protein, at 56,001 to 56,519
_06162
H281DRAFT_06163: H281DRAFT_06163 - hypothetical protein, at 56,476 to 56,760
_06163
H281DRAFT_06164: H281DRAFT_06164 - protein of unknown function (DUF4400), at 56,750 to 57,355
_06164
H281DRAFT_06165: H281DRAFT_06165 - hypothetical protein, at 57,712 to 58,581
_06165
Position (kb) 56
57 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 55.510 kb on + strand, within H281DRAFT_06161 at 55.510 kb on + strand, within H281DRAFT_06161 at 55.511 kb on - strand, within H281DRAFT_06161 at 55.512 kb on + strand, within H281DRAFT_06161 at 55.724 kb on + strand, within H281DRAFT_06161 at 55.869 kb on - strand at 55.908 kb on - strand at 55.908 kb on - strand at 55.911 kb on + strand at 55.911 kb on + strand at 55.911 kb on + strand at 55.912 kb on - strand at 55.912 kb on - strand at 55.912 kb on - strand at 55.912 kb on - strand at 55.931 kb on - strand at 56.472 kb on + strand at 56.472 kb on + strand at 56.472 kb on + strand at 56.473 kb on - strand at 56.473 kb on - strand at 56.473 kb on - strand at 56.473 kb on - strand at 56.698 kb on + strand, within H281DRAFT_06163 at 56.749 kb on + strand at 56.749 kb on + strand at 56.749 kb on + strand at 56.750 kb on - strand at 56.750 kb on - strand at 56.769 kb on + strand at 56.779 kb on - strand at 56.779 kb on - strand at 56.889 kb on + strand, within H281DRAFT_06164 at 56.892 kb on + strand, within H281DRAFT_06164 at 56.892 kb on + strand, within H281DRAFT_06164 at 56.892 kb on + strand, within H281DRAFT_06164 at 57.348 kb on - strand at 57.348 kb on - strand at 57.353 kb on + strand at 57.353 kb on + strand at 57.372 kb on + strand at 57.373 kb on - strand at 57.386 kb on + strand at 57.400 kb on - strand at 57.400 kb on - strand at 57.400 kb on - strand at 57.489 kb on + strand at 57.663 kb on + strand at 57.664 kb on - strand at 57.664 kb on - strand at 57.664 kb on - strand at 57.695 kb on + strand at 57.695 kb on + strand at 57.696 kb on - strand at 57.711 kb on + strand at 57.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 55,510 + H281DRAFT_06161 0.78 +0.8 55,510 + H281DRAFT_06161 0.78 +0.3 55,511 - H281DRAFT_06161 0.79 -0.4 55,512 + H281DRAFT_06161 0.79 -0.6 55,724 + H281DRAFT_06161 0.88 -0.1 55,869 - +0.9 55,908 - +0.0 55,908 - +1.1 55,911 + +4.2 55,911 + -1.6 55,911 + -0.6 55,912 - -0.0 55,912 - -1.2 55,912 - +0.0 55,912 - +1.3 55,931 - +0.6 56,472 + -0.2 56,472 + +1.5 56,472 + +0.9 56,473 - -0.5 56,473 - -0.6 56,473 - +1.7 56,473 - -0.1 56,698 + H281DRAFT_06163 0.78 -1.0 56,749 + -0.0 56,749 + -0.4 56,749 + -0.2 56,750 - -0.1 56,750 - +0.7 56,769 + -0.3 56,779 - -0.4 56,779 - -0.1 56,889 + H281DRAFT_06164 0.23 +0.7 56,892 + H281DRAFT_06164 0.23 +0.2 56,892 + H281DRAFT_06164 0.23 -0.2 56,892 + H281DRAFT_06164 0.23 +1.0 57,348 - +0.4 57,348 - -0.3 57,353 + -1.2 57,353 + -0.3 57,372 + +0.3 57,373 - -0.6 57,386 + +0.7 57,400 - -0.2 57,400 - +0.1 57,400 - +0.1 57,489 + -1.0 57,663 + -0.5 57,664 - +0.4 57,664 - +0.7 57,664 - -1.1 57,695 + -1.0 57,695 + +1.4 57,696 - +0.9 57,711 + -0.6 57,712 - -0.5
Or see this region's nucleotide sequence