Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05444

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05443 and H281DRAFT_05444 are separated by 163 nucleotidesH281DRAFT_05444 and H281DRAFT_05445 are separated by 69 nucleotidesH281DRAFT_05445 and H281DRAFT_05446 are separated by 236 nucleotides H281DRAFT_05443: H281DRAFT_05443 - Transposase, at 23,196 to 23,687 _05443 H281DRAFT_05444: H281DRAFT_05444 - 4-carboxymuconolactone decarboxylase, at 23,851 to 24,411 _05444 H281DRAFT_05445: H281DRAFT_05445 - protein of unknown function (DUF4440), at 24,481 to 24,828 _05445 H281DRAFT_05446: H281DRAFT_05446 - Nitrate/nitrite transporter NarK, at 25,065 to 26,423 _05446 Position (kb) 23 24 25Strain fitness (log2 ratio) -1 0 1at 22.860 kb on + strandat 23.850 kb on + strandat 24.540 kb on + strand, within H281DRAFT_05445at 24.613 kb on + strand, within H281DRAFT_05445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
remove
22,860 + +0.4
23,850 + -1.1
24,540 + H281DRAFT_05445 0.17 -1.7
24,613 + H281DRAFT_05445 0.38 +0.4

Or see this region's nucleotide sequence