Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05135 and H281DRAFT_05136 are separated by 394 nucleotides H281DRAFT_05136 and H281DRAFT_05137 are separated by 10 nucleotides
H281DRAFT_05135: H281DRAFT_05135 - MFS transporter, SHS family, lactate transporter, at 87,065 to 88,315
_05135
H281DRAFT_05136: H281DRAFT_05136 - response regulator receiver sensor signal transduction histidine kinase (EC 2.7.13.3), at 88,710 to 89,870
_05136
H281DRAFT_05137: H281DRAFT_05137 - Signal transduction histidine kinase, at 89,881 to 92,589
_05137
Position (kb) 88
89
90 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 87.783 kb on + strand, within H281DRAFT_05135 at 87.784 kb on - strand, within H281DRAFT_05135 at 87.784 kb on - strand, within H281DRAFT_05135 at 87.784 kb on - strand, within H281DRAFT_05135 at 87.784 kb on - strand, within H281DRAFT_05135 at 87.840 kb on + strand, within H281DRAFT_05135 at 87.840 kb on + strand, within H281DRAFT_05135 at 87.840 kb on + strand, within H281DRAFT_05135 at 87.840 kb on + strand, within H281DRAFT_05135 at 87.841 kb on - strand, within H281DRAFT_05135 at 87.841 kb on - strand, within H281DRAFT_05135 at 87.841 kb on - strand, within H281DRAFT_05135 at 87.841 kb on - strand, within H281DRAFT_05135 at 87.841 kb on - strand, within H281DRAFT_05135 at 87.846 kb on + strand, within H281DRAFT_05135 at 87.846 kb on + strand, within H281DRAFT_05135 at 87.846 kb on + strand, within H281DRAFT_05135 at 87.846 kb on + strand, within H281DRAFT_05135 at 87.847 kb on - strand, within H281DRAFT_05135 at 87.847 kb on - strand, within H281DRAFT_05135 at 87.847 kb on - strand, within H281DRAFT_05135 at 87.998 kb on + strand, within H281DRAFT_05135 at 87.999 kb on - strand, within H281DRAFT_05135 at 87.999 kb on - strand, within H281DRAFT_05135 at 88.167 kb on - strand, within H281DRAFT_05135 at 88.224 kb on - strand at 88.400 kb on - strand at 88.400 kb on - strand at 88.491 kb on - strand at 88.491 kb on - strand at 88.508 kb on - strand at 88.508 kb on - strand at 88.604 kb on + strand at 88.605 kb on - strand at 88.723 kb on + strand at 88.723 kb on + strand at 88.723 kb on + strand at 88.723 kb on + strand at 89.095 kb on - strand at 89.233 kb on - strand, within H281DRAFT_05136 at 89.233 kb on - strand, within H281DRAFT_05136 at 89.233 kb on - strand, within H281DRAFT_05136 at 89.270 kb on + strand, within H281DRAFT_05136 at 89.296 kb on - strand, within H281DRAFT_05136 at 89.489 kb on + strand, within H281DRAFT_05136 at 89.883 kb on - strand at 89.929 kb on - strand at 89.958 kb on + strand at 89.958 kb on + strand at 90.113 kb on + strand at 90.113 kb on + strand at 90.114 kb on - strand at 90.527 kb on + strand, within H281DRAFT_05137 at 90.527 kb on + strand, within H281DRAFT_05137 at 90.528 kb on - strand, within H281DRAFT_05137 at 90.528 kb on - strand, within H281DRAFT_05137 at 90.528 kb on - strand, within H281DRAFT_05137 at 90.528 kb on - strand, within H281DRAFT_05137 at 90.810 kb on - strand, within H281DRAFT_05137 at 90.834 kb on - strand, within H281DRAFT_05137
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 87,783 + H281DRAFT_05135 0.57 +0.2 87,784 - H281DRAFT_05135 0.57 -0.5 87,784 - H281DRAFT_05135 0.57 +0.2 87,784 - H281DRAFT_05135 0.57 +0.3 87,784 - H281DRAFT_05135 0.57 -1.1 87,840 + H281DRAFT_05135 0.62 -0.4 87,840 + H281DRAFT_05135 0.62 -0.6 87,840 + H281DRAFT_05135 0.62 +1.3 87,840 + H281DRAFT_05135 0.62 -2.0 87,841 - H281DRAFT_05135 0.62 +0.4 87,841 - H281DRAFT_05135 0.62 -0.7 87,841 - H281DRAFT_05135 0.62 -0.0 87,841 - H281DRAFT_05135 0.62 +0.6 87,841 - H281DRAFT_05135 0.62 +1.5 87,846 + H281DRAFT_05135 0.62 -0.3 87,846 + H281DRAFT_05135 0.62 -0.2 87,846 + H281DRAFT_05135 0.62 +0.3 87,846 + H281DRAFT_05135 0.62 +0.1 87,847 - H281DRAFT_05135 0.63 -1.2 87,847 - H281DRAFT_05135 0.63 -1.4 87,847 - H281DRAFT_05135 0.63 -1.2 87,998 + H281DRAFT_05135 0.75 -1.6 87,999 - H281DRAFT_05135 0.75 +1.0 87,999 - H281DRAFT_05135 0.75 -1.2 88,167 - H281DRAFT_05135 0.88 -0.1 88,224 - -0.2 88,400 - -0.3 88,400 - +0.3 88,491 - +1.3 88,491 - -0.1 88,508 - -0.3 88,508 - -0.4 88,604 + +0.1 88,605 - +0.4 88,723 + -0.1 88,723 + -0.1 88,723 + -2.3 88,723 + +0.1 89,095 - +0.6 89,233 - H281DRAFT_05136 0.45 +2.9 89,233 - H281DRAFT_05136 0.45 -1.0 89,233 - H281DRAFT_05136 0.45 +0.2 89,270 + H281DRAFT_05136 0.48 -0.6 89,296 - H281DRAFT_05136 0.50 +0.2 89,489 + H281DRAFT_05136 0.67 +0.9 89,883 - +0.6 89,929 - +0.1 89,958 + +2.0 89,958 + +1.2 90,113 + +0.6 90,113 + +0.4 90,114 - -0.6 90,527 + H281DRAFT_05137 0.24 +0.0 90,527 + H281DRAFT_05137 0.24 +0.0 90,528 - H281DRAFT_05137 0.24 -0.4 90,528 - H281DRAFT_05137 0.24 -1.2 90,528 - H281DRAFT_05137 0.24 +0.3 90,528 - H281DRAFT_05137 0.24 -1.0 90,810 - H281DRAFT_05137 0.34 -0.6 90,834 - H281DRAFT_05137 0.35 -0.5
Or see this region's nucleotide sequence