Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05129 and H281DRAFT_05130 are separated by 91 nucleotides H281DRAFT_05130 and H281DRAFT_05131 are separated by 80 nucleotides
H281DRAFT_05129: H281DRAFT_05129 - long-chain acyl-CoA synthetase, at 77,565 to 79,397
_05129
H281DRAFT_05130: H281DRAFT_05130 - 3-ketoacyl-CoA thiolase, at 79,489 to 80,790
_05130
H281DRAFT_05131: H281DRAFT_05131 - Acyl dehydratase, at 80,871 to 81,806
_05131
Position (kb) 79
80
81 Strain fitness (log2 ratio) -1
0
1
2 at 78.622 kb on + strand, within H281DRAFT_05129 at 78.677 kb on + strand, within H281DRAFT_05129 at 78.678 kb on - strand, within H281DRAFT_05129 at 78.678 kb on - strand, within H281DRAFT_05129 at 78.678 kb on - strand, within H281DRAFT_05129 at 79.019 kb on + strand, within H281DRAFT_05129 at 79.114 kb on + strand, within H281DRAFT_05129 at 79.114 kb on + strand at 79.141 kb on + strand, within H281DRAFT_05129 at 79.141 kb on + strand, within H281DRAFT_05129 at 79.142 kb on - strand, within H281DRAFT_05129 at 79.142 kb on - strand, within H281DRAFT_05129 at 79.201 kb on + strand, within H281DRAFT_05129 at 79.280 kb on + strand at 80.526 kb on - strand, within H281DRAFT_05130 at 80.708 kb on + strand at 80.812 kb on + strand at 80.812 kb on + strand at 81.154 kb on + strand, within H281DRAFT_05131 at 81.416 kb on - strand, within H281DRAFT_05131 at 81.535 kb on + strand, within H281DRAFT_05131
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 78,622 + H281DRAFT_05129 0.58 +0.6 78,677 + H281DRAFT_05129 0.61 +0.9 78,678 - H281DRAFT_05129 0.61 +1.2 78,678 - H281DRAFT_05129 0.61 +0.4 78,678 - H281DRAFT_05129 0.61 -1.5 79,019 + H281DRAFT_05129 0.79 +1.0 79,114 + H281DRAFT_05129 0.85 -0.4 79,114 + +0.6 79,141 + H281DRAFT_05129 0.86 +0.3 79,141 + H281DRAFT_05129 0.86 +1.8 79,142 - H281DRAFT_05129 0.86 +0.1 79,142 - H281DRAFT_05129 0.86 -0.3 79,201 + H281DRAFT_05129 0.89 -1.1 79,280 + +0.4 80,526 - H281DRAFT_05130 0.80 -0.4 80,708 + -0.2 80,812 + +0.7 80,812 + -0.7 81,154 + H281DRAFT_05131 0.30 -0.6 81,416 - H281DRAFT_05131 0.58 +0.0 81,535 + H281DRAFT_05131 0.71 -1.1
Or see this region's nucleotide sequence