Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05065 and H281DRAFT_05066 are separated by 104 nucleotides H281DRAFT_05066 and H281DRAFT_05067 are separated by 146 nucleotides H281DRAFT_05067 and H281DRAFT_05068 are separated by 254 nucleotides H281DRAFT_05068 and H281DRAFT_05069 are separated by 93 nucleotides
H281DRAFT_05065: H281DRAFT_05065 - Putative SOS response-associated peptidase YedK, at 5,909 to 6,871
_05065
H281DRAFT_05066: H281DRAFT_05066 - hypothetical protein, at 6,976 to 7,248
_05066
H281DRAFT_05067: H281DRAFT_05067 - protein of unknown function (DUF3597), at 7,395 to 7,847
_05067
H281DRAFT_05068: H281DRAFT_05068 - Uncharacterized conserved protein, at 8,102 to 8,380
_05068
H281DRAFT_05069: H281DRAFT_05069 - Sporulation protein YlmC, PRC-barrel domain family, at 8,474 to 8,947
_05069
Position (kb) 7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 6.421 kb on + strand, within H281DRAFT_05065 at 6.440 kb on + strand, within H281DRAFT_05065 at 6.549 kb on - strand, within H281DRAFT_05065 at 6.562 kb on - strand, within H281DRAFT_05065 at 6.755 kb on - strand, within H281DRAFT_05065 at 6.755 kb on - strand, within H281DRAFT_05065 at 6.771 kb on + strand, within H281DRAFT_05065 at 6.815 kb on + strand at 6.816 kb on - strand at 6.849 kb on - strand at 6.856 kb on + strand at 6.857 kb on - strand at 6.980 kb on + strand at 7.504 kb on + strand, within H281DRAFT_05067 at 7.505 kb on - strand, within H281DRAFT_05067 at 7.505 kb on - strand, within H281DRAFT_05067 at 7.920 kb on + strand at 8.002 kb on + strand at 8.006 kb on + strand at 8.270 kb on + strand, within H281DRAFT_05068 at 8.417 kb on + strand at 8.551 kb on - strand, within H281DRAFT_05069 at 8.554 kb on - strand, within H281DRAFT_05069 at 8.554 kb on - strand, within H281DRAFT_05069 at 8.558 kb on - strand, within H281DRAFT_05069 at 8.558 kb on - strand, within H281DRAFT_05069 at 8.754 kb on + strand, within H281DRAFT_05069
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 6,421 + H281DRAFT_05065 0.53 -0.6 6,440 + H281DRAFT_05065 0.55 -1.5 6,549 - H281DRAFT_05065 0.66 -0.5 6,562 - H281DRAFT_05065 0.68 -0.7 6,755 - H281DRAFT_05065 0.88 +0.9 6,755 - H281DRAFT_05065 0.88 -1.1 6,771 + H281DRAFT_05065 0.90 -1.0 6,815 + -0.3 6,816 - -0.2 6,849 - -0.2 6,856 + +0.4 6,857 - -0.5 6,980 + -0.1 7,504 + H281DRAFT_05067 0.24 -1.0 7,505 - H281DRAFT_05067 0.24 +1.0 7,505 - H281DRAFT_05067 0.24 -1.2 7,920 + -0.6 8,002 + -2.6 8,006 + -0.3 8,270 + H281DRAFT_05068 0.60 +2.6 8,417 + -1.6 8,551 - H281DRAFT_05069 0.16 -0.2 8,554 - H281DRAFT_05069 0.17 -1.5 8,554 - H281DRAFT_05069 0.17 +0.6 8,558 - H281DRAFT_05069 0.18 +0.3 8,558 - H281DRAFT_05069 0.18 -0.0 8,754 + H281DRAFT_05069 0.59 -1.7
Or see this region's nucleotide sequence