Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04753 and H281DRAFT_04754 are separated by 6 nucleotides H281DRAFT_04754 and H281DRAFT_04755 are separated by 153 nucleotides H281DRAFT_04755 and H281DRAFT_04756 are separated by 208 nucleotides H281DRAFT_04756 and H281DRAFT_04757 are separated by 99 nucleotides
H281DRAFT_04753: H281DRAFT_04753 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 167,056 to 169,419
_04753
H281DRAFT_04754: H281DRAFT_04754 - xanthine dehydrogenase accessory protein XdhC, at 169,426 to 170,025
_04754
H281DRAFT_04755: H281DRAFT_04755 - transcriptional regulator, LysR family, at 170,179 to 171,144
_04755
H281DRAFT_04756: H281DRAFT_04756 - 2-hydroxychromene-2-carboxylate isomerase, at 171,353 to 171,997
_04756
H281DRAFT_04757: H281DRAFT_04757 - TRAP-type uncharacterized transport system, substrate-binding protein, at 172,097 to 173,596
_04757
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 169.418 kb on - strand at 169.545 kb on + strand, within H281DRAFT_04754 at 169.545 kb on + strand, within H281DRAFT_04754 at 169.546 kb on - strand, within H281DRAFT_04754 at 169.768 kb on + strand, within H281DRAFT_04754 at 169.768 kb on + strand, within H281DRAFT_04754 at 169.835 kb on + strand, within H281DRAFT_04754 at 169.836 kb on - strand, within H281DRAFT_04754 at 170.084 kb on - strand at 170.375 kb on + strand, within H281DRAFT_04755 at 170.451 kb on - strand, within H281DRAFT_04755 at 170.532 kb on - strand, within H281DRAFT_04755 at 171.218 kb on + strand at 171.218 kb on + strand at 171.236 kb on + strand at 171.236 kb on + strand at 171.238 kb on + strand at 171.238 kb on + strand at 171.239 kb on - strand at 171.282 kb on + strand at 171.283 kb on - strand at 171.435 kb on + strand, within H281DRAFT_04756 at 171.436 kb on - strand, within H281DRAFT_04756 at 171.436 kb on - strand, within H281DRAFT_04756 at 171.504 kb on + strand, within H281DRAFT_04756 at 171.505 kb on - strand, within H281DRAFT_04756 at 171.591 kb on - strand, within H281DRAFT_04756 at 171.759 kb on + strand, within H281DRAFT_04756 at 171.765 kb on - strand, within H281DRAFT_04756 at 171.933 kb on + strand at 171.933 kb on + strand at 171.934 kb on - strand at 171.958 kb on - strand at 171.997 kb on + strand at 171.997 kb on + strand at 171.997 kb on + strand at 171.997 kb on + strand at 171.997 kb on + strand at 171.997 kb on + strand at 171.998 kb on - strand at 171.998 kb on - strand at 171.998 kb on - strand at 171.998 kb on - strand at 172.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 169,418 - +0.3 169,545 + H281DRAFT_04754 0.20 -0.6 169,545 + H281DRAFT_04754 0.20 -0.3 169,546 - H281DRAFT_04754 0.20 +0.6 169,768 + H281DRAFT_04754 0.57 +0.1 169,768 + H281DRAFT_04754 0.57 +0.3 169,835 + H281DRAFT_04754 0.68 +0.4 169,836 - H281DRAFT_04754 0.68 +0.9 170,084 - -0.6 170,375 + H281DRAFT_04755 0.20 +0.6 170,451 - H281DRAFT_04755 0.28 -0.1 170,532 - H281DRAFT_04755 0.37 -0.3 171,218 + -0.1 171,218 + +1.4 171,236 + -0.9 171,236 + -0.1 171,238 + +0.0 171,238 + +1.1 171,239 - -0.1 171,282 + -0.0 171,283 - +0.2 171,435 + H281DRAFT_04756 0.13 -0.4 171,436 - H281DRAFT_04756 0.13 +1.0 171,436 - H281DRAFT_04756 0.13 -3.4 171,504 + H281DRAFT_04756 0.23 +0.1 171,505 - H281DRAFT_04756 0.24 +0.2 171,591 - H281DRAFT_04756 0.37 +0.8 171,759 + H281DRAFT_04756 0.63 +0.2 171,765 - H281DRAFT_04756 0.64 +0.2 171,933 + +0.1 171,933 + -0.8 171,934 - +1.5 171,958 - +0.0 171,997 + +1.2 171,997 + -0.6 171,997 + -0.8 171,997 + +0.7 171,997 + -1.4 171,997 + -0.3 171,998 - -0.1 171,998 - +0.4 171,998 - +1.7 171,998 - -0.2 172,070 + +0.8
Or see this region's nucleotide sequence