Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04749 and H281DRAFT_04750 are separated by 190 nucleotides H281DRAFT_04750 and H281DRAFT_04751 are separated by 627 nucleotides
H281DRAFT_04749: H281DRAFT_04749 - aspartate 4-decarboxylase, at 160,171 to 161,835
_04749
H281DRAFT_04750: H281DRAFT_04750 - aspartate aminotransferase, at 162,026 to 163,249
_04750
H281DRAFT_04751: H281DRAFT_04751 - Predicted arabinose efflux permease, MFS family, at 163,877 to 165,088
_04751
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 161.075 kb on - strand, within H281DRAFT_04749 at 161.141 kb on - strand, within H281DRAFT_04749 at 161.146 kb on + strand, within H281DRAFT_04749 at 161.147 kb on - strand, within H281DRAFT_04749 at 161.419 kb on - strand at 161.431 kb on + strand, within H281DRAFT_04749 at 161.431 kb on + strand, within H281DRAFT_04749 at 161.432 kb on - strand, within H281DRAFT_04749 at 161.432 kb on - strand, within H281DRAFT_04749 at 161.480 kb on - strand, within H281DRAFT_04749 at 161.530 kb on + strand at 161.533 kb on + strand, within H281DRAFT_04749 at 161.554 kb on + strand, within H281DRAFT_04749 at 161.776 kb on + strand at 161.964 kb on + strand at 162.043 kb on + strand at 162.044 kb on - strand at 162.169 kb on + strand, within H281DRAFT_04750 at 162.240 kb on - strand, within H281DRAFT_04750 at 162.537 kb on - strand, within H281DRAFT_04750 at 162.745 kb on + strand, within H281DRAFT_04750 at 162.746 kb on - strand, within H281DRAFT_04750 at 162.818 kb on + strand, within H281DRAFT_04750 at 162.850 kb on - strand, within H281DRAFT_04750 at 162.960 kb on + strand, within H281DRAFT_04750 at 162.960 kb on + strand, within H281DRAFT_04750 at 162.960 kb on + strand at 162.960 kb on + strand, within H281DRAFT_04750 at 162.961 kb on - strand, within H281DRAFT_04750 at 162.961 kb on - strand, within H281DRAFT_04750 at 162.963 kb on - strand, within H281DRAFT_04750 at 162.963 kb on - strand, within H281DRAFT_04750 at 162.963 kb on - strand, within H281DRAFT_04750 at 163.035 kb on + strand, within H281DRAFT_04750 at 163.247 kb on + strand at 163.306 kb on - strand at 163.467 kb on - strand at 163.478 kb on + strand at 163.479 kb on - strand at 163.479 kb on - strand at 163.479 kb on - strand at 163.479 kb on - strand at 163.578 kb on + strand at 163.578 kb on + strand at 163.579 kb on - strand at 163.748 kb on + strand at 163.761 kb on + strand at 163.761 kb on + strand at 163.761 kb on + strand at 164.006 kb on - strand, within H281DRAFT_04751 at 164.006 kb on - strand, within H281DRAFT_04751 at 164.007 kb on + strand, within H281DRAFT_04751 at 164.026 kb on + strand, within H281DRAFT_04751 at 164.026 kb on + strand, within H281DRAFT_04751 at 164.027 kb on - strand, within H281DRAFT_04751 at 164.027 kb on - strand, within H281DRAFT_04751 at 164.029 kb on + strand, within H281DRAFT_04751 at 164.029 kb on + strand, within H281DRAFT_04751 at 164.030 kb on - strand, within H281DRAFT_04751 at 164.129 kb on + strand, within H281DRAFT_04751 at 164.129 kb on + strand, within H281DRAFT_04751 at 164.129 kb on + strand, within H281DRAFT_04751
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 161,075 - H281DRAFT_04749 0.54 -0.3 161,141 - H281DRAFT_04749 0.58 -0.1 161,146 + H281DRAFT_04749 0.59 -0.2 161,147 - H281DRAFT_04749 0.59 +0.3 161,419 - +0.9 161,431 + H281DRAFT_04749 0.76 -0.1 161,431 + H281DRAFT_04749 0.76 -0.1 161,432 - H281DRAFT_04749 0.76 +0.6 161,432 - H281DRAFT_04749 0.76 +0.3 161,480 - H281DRAFT_04749 0.79 -2.0 161,530 + +1.4 161,533 + H281DRAFT_04749 0.82 -0.7 161,554 + H281DRAFT_04749 0.83 +1.1 161,776 + +0.6 161,964 + -0.1 162,043 + +0.6 162,044 - +0.1 162,169 + H281DRAFT_04750 0.12 -0.1 162,240 - H281DRAFT_04750 0.17 -0.6 162,537 - H281DRAFT_04750 0.42 +3.9 162,745 + H281DRAFT_04750 0.59 +0.2 162,746 - H281DRAFT_04750 0.59 +0.3 162,818 + H281DRAFT_04750 0.65 -0.2 162,850 - H281DRAFT_04750 0.67 +0.7 162,960 + H281DRAFT_04750 0.76 -1.2 162,960 + H281DRAFT_04750 0.76 +0.6 162,960 + -0.4 162,960 + H281DRAFT_04750 0.76 +0.6 162,961 - H281DRAFT_04750 0.76 +0.3 162,961 - H281DRAFT_04750 0.76 -0.5 162,963 - H281DRAFT_04750 0.77 -0.3 162,963 - H281DRAFT_04750 0.77 +1.0 162,963 - H281DRAFT_04750 0.77 +1.1 163,035 + H281DRAFT_04750 0.82 -0.2 163,247 + -0.3 163,306 - -0.7 163,467 - +0.9 163,478 + +0.7 163,479 - -0.2 163,479 - +0.3 163,479 - -1.5 163,479 - -0.6 163,578 + +0.1 163,578 + +0.3 163,579 - +0.1 163,748 + +0.5 163,761 + -0.4 163,761 + +0.9 163,761 + +0.5 164,006 - H281DRAFT_04751 0.11 +0.1 164,006 - H281DRAFT_04751 0.11 +2.2 164,007 + H281DRAFT_04751 0.11 -1.2 164,026 + H281DRAFT_04751 0.12 -0.3 164,026 + H281DRAFT_04751 0.12 +0.7 164,027 - H281DRAFT_04751 0.12 +2.0 164,027 - H281DRAFT_04751 0.12 -0.8 164,029 + H281DRAFT_04751 0.13 +0.1 164,029 + H281DRAFT_04751 0.13 -0.5 164,030 - H281DRAFT_04751 0.13 +0.5 164,129 + H281DRAFT_04751 0.21 +0.2 164,129 + H281DRAFT_04751 0.21 -2.2 164,129 + H281DRAFT_04751 0.21 +0.4
Or see this region's nucleotide sequence