Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04645 and H281DRAFT_04646 are separated by 44 nucleotides H281DRAFT_04646 and H281DRAFT_04647 are separated by 40 nucleotides H281DRAFT_04647 and H281DRAFT_04648 are separated by 10 nucleotides
H281DRAFT_04645: H281DRAFT_04645 - hypothetical protein, at 45,527 to 46,414
_04645
H281DRAFT_04646: H281DRAFT_04646 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 46,459 to 47,217
_04646
H281DRAFT_04647: H281DRAFT_04647 - D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase, at 47,258 to 47,812
_04647
H281DRAFT_04648: H281DRAFT_04648 - glycyl-tRNA synthetase beta chain, at 47,823 to 49,925
_04648
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1
2
3 at 45.672 kb on + strand, within H281DRAFT_04645 at 45.673 kb on - strand, within H281DRAFT_04645 at 45.673 kb on - strand, within H281DRAFT_04645 at 45.783 kb on + strand, within H281DRAFT_04645 at 45.784 kb on - strand, within H281DRAFT_04645 at 45.991 kb on - strand, within H281DRAFT_04645 at 46.399 kb on + strand at 46.616 kb on - strand, within H281DRAFT_04646 at 46.616 kb on - strand, within H281DRAFT_04646 at 47.200 kb on - strand at 47.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 45,672 + H281DRAFT_04645 0.16 -0.3 45,673 - H281DRAFT_04645 0.16 +0.0 45,673 - H281DRAFT_04645 0.16 +0.9 45,783 + H281DRAFT_04645 0.29 +1.2 45,784 - H281DRAFT_04645 0.29 +0.3 45,991 - H281DRAFT_04645 0.52 +0.5 46,399 + +2.9 46,616 - H281DRAFT_04646 0.21 +1.9 46,616 - H281DRAFT_04646 0.21 -1.4 47,200 - +1.3 47,231 - +0.1
Or see this region's nucleotide sequence