Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04642 and H281DRAFT_04643 are separated by 123 nucleotides H281DRAFT_04643 and H281DRAFT_04644 are separated by 40 nucleotides H281DRAFT_04644 and H281DRAFT_04645 are separated by 76 nucleotides
H281DRAFT_04642: H281DRAFT_04642 - Outer membrane protein (porin), at 43,389 to 44,501
_04642
H281DRAFT_04643: H281DRAFT_04643 - methylmalonyl-CoA epimerase, at 44,625 to 45,011
_04643
H281DRAFT_04644: H281DRAFT_04644 - hypothetical protein, at 45,052 to 45,450
_04644
H281DRAFT_04645: H281DRAFT_04645 - hypothetical protein, at 45,527 to 46,414
_04645
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 43.645 kb on - strand, within H281DRAFT_04642 at 43.645 kb on - strand, within H281DRAFT_04642 at 43.645 kb on - strand, within H281DRAFT_04642 at 43.645 kb on - strand, within H281DRAFT_04642 at 43.747 kb on - strand, within H281DRAFT_04642 at 43.747 kb on - strand, within H281DRAFT_04642 at 43.775 kb on - strand, within H281DRAFT_04642 at 43.872 kb on + strand, within H281DRAFT_04642 at 43.885 kb on - strand, within H281DRAFT_04642 at 43.942 kb on - strand, within H281DRAFT_04642 at 43.971 kb on + strand, within H281DRAFT_04642 at 43.972 kb on - strand, within H281DRAFT_04642 at 44.011 kb on - strand, within H281DRAFT_04642 at 44.073 kb on + strand, within H281DRAFT_04642 at 44.074 kb on - strand, within H281DRAFT_04642 at 44.107 kb on - strand, within H281DRAFT_04642 at 44.326 kb on - strand, within H281DRAFT_04642 at 44.343 kb on + strand, within H281DRAFT_04642 at 44.344 kb on - strand, within H281DRAFT_04642 at 44.361 kb on - strand, within H281DRAFT_04642 at 44.370 kb on + strand, within H281DRAFT_04642 at 44.370 kb on + strand, within H281DRAFT_04642 at 44.371 kb on - strand, within H281DRAFT_04642 at 44.512 kb on - strand at 44.586 kb on - strand at 44.591 kb on + strand at 44.591 kb on + strand at 44.619 kb on + strand at 44.682 kb on + strand, within H281DRAFT_04643 at 44.682 kb on + strand, within H281DRAFT_04643 at 44.707 kb on + strand, within H281DRAFT_04643 at 44.725 kb on - strand, within H281DRAFT_04643 at 44.821 kb on - strand, within H281DRAFT_04643 at 44.821 kb on - strand, within H281DRAFT_04643 at 44.871 kb on + strand, within H281DRAFT_04643 at 44.872 kb on - strand, within H281DRAFT_04643 at 44.872 kb on - strand, within H281DRAFT_04643 at 45.070 kb on + strand at 45.070 kb on + strand at 45.448 kb on + strand at 45.672 kb on + strand, within H281DRAFT_04645 at 45.673 kb on - strand, within H281DRAFT_04645 at 45.673 kb on - strand, within H281DRAFT_04645 at 45.783 kb on + strand, within H281DRAFT_04645 at 45.784 kb on - strand, within H281DRAFT_04645 at 45.991 kb on - strand, within H281DRAFT_04645
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 43,645 - H281DRAFT_04642 0.23 -0.3 43,645 - H281DRAFT_04642 0.23 -0.1 43,645 - H281DRAFT_04642 0.23 -1.6 43,645 - H281DRAFT_04642 0.23 +1.4 43,747 - H281DRAFT_04642 0.32 -0.1 43,747 - H281DRAFT_04642 0.32 -0.6 43,775 - H281DRAFT_04642 0.35 -0.3 43,872 + H281DRAFT_04642 0.43 -0.6 43,885 - H281DRAFT_04642 0.45 +0.6 43,942 - H281DRAFT_04642 0.50 -0.4 43,971 + H281DRAFT_04642 0.52 +0.7 43,972 - H281DRAFT_04642 0.52 +0.3 44,011 - H281DRAFT_04642 0.56 -0.2 44,073 + H281DRAFT_04642 0.61 -0.6 44,074 - H281DRAFT_04642 0.62 +0.3 44,107 - H281DRAFT_04642 0.65 +0.9 44,326 - H281DRAFT_04642 0.84 -2.5 44,343 + H281DRAFT_04642 0.86 +0.3 44,344 - H281DRAFT_04642 0.86 +0.2 44,361 - H281DRAFT_04642 0.87 -0.5 44,370 + H281DRAFT_04642 0.88 +0.2 44,370 + H281DRAFT_04642 0.88 +0.2 44,371 - H281DRAFT_04642 0.88 -0.2 44,512 - +0.4 44,586 - -0.5 44,591 + -0.6 44,591 + -1.5 44,619 + -2.1 44,682 + H281DRAFT_04643 0.15 -1.6 44,682 + H281DRAFT_04643 0.15 -0.1 44,707 + H281DRAFT_04643 0.21 -0.0 44,725 - H281DRAFT_04643 0.26 -0.1 44,821 - H281DRAFT_04643 0.51 -0.1 44,821 - H281DRAFT_04643 0.51 -1.5 44,871 + H281DRAFT_04643 0.64 -3.0 44,872 - H281DRAFT_04643 0.64 -0.4 44,872 - H281DRAFT_04643 0.64 -1.1 45,070 + +0.6 45,070 + +0.8 45,448 + +0.5 45,672 + H281DRAFT_04645 0.16 -0.3 45,673 - H281DRAFT_04645 0.16 +0.0 45,673 - H281DRAFT_04645 0.16 +0.9 45,783 + H281DRAFT_04645 0.29 +1.2 45,784 - H281DRAFT_04645 0.29 +0.3 45,991 - H281DRAFT_04645 0.52 +0.5
Or see this region's nucleotide sequence