Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04515 and H281DRAFT_04516 are separated by 9 nucleotides H281DRAFT_04516 and H281DRAFT_04517 are separated by 191 nucleotides H281DRAFT_04517 and H281DRAFT_04518 are separated by 66 nucleotides
H281DRAFT_04515: H281DRAFT_04515 - RNAse G, at 247,268 to 248,737
_04515
H281DRAFT_04516: H281DRAFT_04516 - septum formation protein, at 248,747 to 249,376
_04516
H281DRAFT_04517: H281DRAFT_04517 - 23S rRNA (pseudouridine1915-N3)-methyltransferase, at 249,568 to 250,038
_04517
H281DRAFT_04518: H281DRAFT_04518 - ribosome-associated protein, at 250,105 to 250,560
_04518
Position (kb) 248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 247.959 kb on + strand, within H281DRAFT_04515 at 248.110 kb on - strand, within H281DRAFT_04515 at 248.350 kb on - strand, within H281DRAFT_04515 at 248.817 kb on + strand, within H281DRAFT_04516 at 248.818 kb on - strand, within H281DRAFT_04516 at 248.903 kb on + strand, within H281DRAFT_04516 at 248.976 kb on - strand, within H281DRAFT_04516 at 248.997 kb on - strand at 249.112 kb on + strand, within H281DRAFT_04516 at 249.113 kb on - strand, within H281DRAFT_04516 at 249.204 kb on + strand, within H281DRAFT_04516 at 249.205 kb on - strand, within H281DRAFT_04516 at 249.400 kb on + strand at 249.400 kb on + strand at 249.473 kb on - strand at 249.570 kb on - strand at 249.570 kb on - strand at 249.640 kb on + strand, within H281DRAFT_04517 at 249.641 kb on - strand, within H281DRAFT_04517 at 249.641 kb on - strand, within H281DRAFT_04517 at 249.641 kb on - strand at 249.641 kb on - strand, within H281DRAFT_04517 at 249.641 kb on - strand, within H281DRAFT_04517 at 249.641 kb on - strand at 249.641 kb on - strand, within H281DRAFT_04517 at 250.045 kb on + strand at 250.045 kb on + strand at 250.046 kb on - strand at 250.218 kb on + strand, within H281DRAFT_04518 at 250.269 kb on - strand, within H281DRAFT_04518 at 250.269 kb on - strand, within H281DRAFT_04518 at 250.269 kb on - strand, within H281DRAFT_04518 at 250.271 kb on + strand, within H281DRAFT_04518 at 250.271 kb on + strand, within H281DRAFT_04518
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 247,959 + H281DRAFT_04515 0.47 -0.9 248,110 - H281DRAFT_04515 0.57 -3.4 248,350 - H281DRAFT_04515 0.74 -2.8 248,817 + H281DRAFT_04516 0.11 -0.1 248,818 - H281DRAFT_04516 0.11 -2.1 248,903 + H281DRAFT_04516 0.25 +1.3 248,976 - H281DRAFT_04516 0.36 -0.2 248,997 - +1.8 249,112 + H281DRAFT_04516 0.58 -0.2 249,113 - H281DRAFT_04516 0.58 +0.1 249,204 + H281DRAFT_04516 0.73 +0.1 249,205 - H281DRAFT_04516 0.73 -0.8 249,400 + +0.7 249,400 + -0.5 249,473 - -0.1 249,570 - -1.0 249,570 - +0.1 249,640 + H281DRAFT_04517 0.15 -2.2 249,641 - H281DRAFT_04517 0.15 -0.2 249,641 - H281DRAFT_04517 0.15 -0.0 249,641 - -0.2 249,641 - H281DRAFT_04517 0.15 -1.1 249,641 - H281DRAFT_04517 0.15 -0.2 249,641 - +0.8 249,641 - H281DRAFT_04517 0.15 -1.5 250,045 + +0.6 250,045 + -1.4 250,046 - +1.7 250,218 + H281DRAFT_04518 0.25 +0.5 250,269 - H281DRAFT_04518 0.36 +0.4 250,269 - H281DRAFT_04518 0.36 +0.4 250,269 - H281DRAFT_04518 0.36 -1.0 250,271 + H281DRAFT_04518 0.36 -0.9 250,271 + H281DRAFT_04518 0.36 +0.6
Or see this region's nucleotide sequence