Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04321 and H281DRAFT_04322 are separated by 151 nucleotides H281DRAFT_04322 and H281DRAFT_04323 are separated by 322 nucleotides H281DRAFT_04323 and H281DRAFT_04324 overlap by 4 nucleotides
H281DRAFT_04321: H281DRAFT_04321 - DNA helicase-2 / ATP-dependent DNA helicase PcrA, at 38,595 to 40,724
_04321
H281DRAFT_04322: H281DRAFT_04322 - Protein of unknown function (DUF4088), at 40,876 to 41,643
_04322
H281DRAFT_04323: H281DRAFT_04323 - Branched-chain amino acid transport protein, at 41,966 to 42,295
_04323
H281DRAFT_04324: H281DRAFT_04324 - 4-azaleucine resistance probable transporter AzlC, at 42,292 to 43,029
_04324
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 39.920 kb on - strand, within H281DRAFT_04321 at 39.926 kb on - strand, within H281DRAFT_04321 at 40.095 kb on + strand, within H281DRAFT_04321 at 40.096 kb on - strand, within H281DRAFT_04321 at 40.096 kb on - strand, within H281DRAFT_04321 at 40.147 kb on - strand, within H281DRAFT_04321 at 40.230 kb on + strand, within H281DRAFT_04321 at 40.231 kb on - strand, within H281DRAFT_04321 at 40.231 kb on - strand, within H281DRAFT_04321 at 40.231 kb on - strand, within H281DRAFT_04321 at 40.231 kb on - strand, within H281DRAFT_04321 at 40.324 kb on - strand, within H281DRAFT_04321 at 40.464 kb on + strand, within H281DRAFT_04321 at 40.500 kb on - strand, within H281DRAFT_04321 at 40.500 kb on - strand, within H281DRAFT_04321 at 40.542 kb on - strand at 40.542 kb on - strand at 40.542 kb on - strand at 40.614 kb on + strand at 40.615 kb on - strand at 40.615 kb on - strand at 40.615 kb on - strand at 40.837 kb on - strand at 40.843 kb on + strand at 40.843 kb on + strand at 40.844 kb on - strand at 40.844 kb on - strand at 40.967 kb on + strand, within H281DRAFT_04322 at 41.009 kb on + strand, within H281DRAFT_04322 at 41.010 kb on - strand, within H281DRAFT_04322 at 41.144 kb on + strand, within H281DRAFT_04322 at 41.145 kb on - strand, within H281DRAFT_04322 at 41.442 kb on - strand, within H281DRAFT_04322 at 41.442 kb on - strand, within H281DRAFT_04322 at 41.442 kb on - strand, within H281DRAFT_04322 at 41.631 kb on + strand at 41.631 kb on + strand at 41.771 kb on - strand at 41.836 kb on + strand at 41.836 kb on + strand at 41.836 kb on + strand at 41.944 kb on + strand at 41.944 kb on + strand at 41.945 kb on - strand at 41.945 kb on - strand at 42.057 kb on - strand, within H281DRAFT_04323 at 42.288 kb on + strand at 42.289 kb on - strand at 42.289 kb on - strand at 42.289 kb on - strand at 42.289 kb on - strand at 42.355 kb on + strand at 42.355 kb on + strand at 42.404 kb on + strand, within H281DRAFT_04324 at 42.404 kb on + strand, within H281DRAFT_04324 at 42.405 kb on - strand, within H281DRAFT_04324 at 42.405 kb on - strand, within H281DRAFT_04324 at 42.462 kb on - strand, within H281DRAFT_04324 at 42.599 kb on + strand, within H281DRAFT_04324 at 42.626 kb on + strand, within H281DRAFT_04324 at 42.626 kb on + strand, within H281DRAFT_04324 at 42.627 kb on - strand, within H281DRAFT_04324
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 39,920 - H281DRAFT_04321 0.62 +0.6 39,926 - H281DRAFT_04321 0.62 +0.5 40,095 + H281DRAFT_04321 0.70 +0.6 40,096 - H281DRAFT_04321 0.70 -2.3 40,096 - H281DRAFT_04321 0.70 -0.5 40,147 - H281DRAFT_04321 0.73 +0.2 40,230 + H281DRAFT_04321 0.77 -0.2 40,231 - H281DRAFT_04321 0.77 -0.2 40,231 - H281DRAFT_04321 0.77 +1.2 40,231 - H281DRAFT_04321 0.77 +0.6 40,231 - H281DRAFT_04321 0.77 +1.0 40,324 - H281DRAFT_04321 0.81 -0.6 40,464 + H281DRAFT_04321 0.88 +0.6 40,500 - H281DRAFT_04321 0.89 +1.0 40,500 - H281DRAFT_04321 0.89 +0.8 40,542 - +0.3 40,542 - -1.8 40,542 - -2.7 40,614 + +0.5 40,615 - -1.6 40,615 - -0.6 40,615 - -1.6 40,837 - +0.9 40,843 + +0.0 40,843 + -0.3 40,844 - +0.6 40,844 - -0.3 40,967 + H281DRAFT_04322 0.12 -0.4 41,009 + H281DRAFT_04322 0.17 +0.3 41,010 - H281DRAFT_04322 0.17 -0.2 41,144 + H281DRAFT_04322 0.35 -0.4 41,145 - H281DRAFT_04322 0.35 +2.5 41,442 - H281DRAFT_04322 0.74 +0.2 41,442 - H281DRAFT_04322 0.74 -0.2 41,442 - H281DRAFT_04322 0.74 -2.9 41,631 + +0.8 41,631 + -0.4 41,771 - -1.8 41,836 + -0.5 41,836 + -0.5 41,836 + +0.2 41,944 + -0.9 41,944 + -1.7 41,945 - +0.3 41,945 - -1.2 42,057 - H281DRAFT_04323 0.28 +0.1 42,288 + +0.1 42,289 - +0.8 42,289 - +0.5 42,289 - +1.8 42,289 - +0.0 42,355 + +1.3 42,355 + +0.9 42,404 + H281DRAFT_04324 0.15 -0.1 42,404 + H281DRAFT_04324 0.15 -0.6 42,405 - H281DRAFT_04324 0.15 -0.3 42,405 - H281DRAFT_04324 0.15 +1.9 42,462 - H281DRAFT_04324 0.23 -0.1 42,599 + H281DRAFT_04324 0.42 +2.5 42,626 + H281DRAFT_04324 0.45 +0.1 42,626 + H281DRAFT_04324 0.45 -0.9 42,627 - H281DRAFT_04324 0.45 -0.6
Or see this region's nucleotide sequence