Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04169 and H281DRAFT_04170 are separated by 1 nucleotides H281DRAFT_04170 and H281DRAFT_04171 are separated by 18 nucleotides
H281DRAFT_04169: H281DRAFT_04169 - outer membrane protein, multidrug efflux system, at 282,922 to 284,451
_04169
H281DRAFT_04170: H281DRAFT_04170 - multidrug efflux pump, at 284,453 to 287,674
_04170
H281DRAFT_04171: H281DRAFT_04171 - membrane fusion protein, multidrug efflux system, at 287,693 to 288,925
_04171
Position (kb) 284
285
286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2 at 283.833 kb on + strand, within H281DRAFT_04169 at 283.834 kb on - strand, within H281DRAFT_04169 at 283.834 kb on - strand, within H281DRAFT_04169 at 284.028 kb on - strand, within H281DRAFT_04169 at 284.538 kb on + strand at 284.538 kb on + strand at 284.539 kb on - strand at 284.539 kb on - strand at 284.539 kb on - strand at 284.647 kb on + strand at 285.246 kb on + strand, within H281DRAFT_04170 at 285.246 kb on + strand, within H281DRAFT_04170 at 285.247 kb on - strand, within H281DRAFT_04170 at 285.363 kb on + strand, within H281DRAFT_04170 at 285.377 kb on - strand, within H281DRAFT_04170 at 285.746 kb on + strand, within H281DRAFT_04170 at 285.777 kb on + strand, within H281DRAFT_04170 at 285.777 kb on + strand, within H281DRAFT_04170 at 285.778 kb on - strand, within H281DRAFT_04170 at 285.897 kb on - strand, within H281DRAFT_04170 at 285.897 kb on - strand, within H281DRAFT_04170 at 286.045 kb on - strand, within H281DRAFT_04170 at 286.275 kb on + strand, within H281DRAFT_04170 at 286.280 kb on - strand at 286.608 kb on + strand, within H281DRAFT_04170 at 286.609 kb on - strand, within H281DRAFT_04170 at 286.609 kb on - strand, within H281DRAFT_04170 at 286.728 kb on + strand, within H281DRAFT_04170 at 286.951 kb on + strand, within H281DRAFT_04170 at 287.205 kb on + strand, within H281DRAFT_04170 at 287.206 kb on - strand, within H281DRAFT_04170 at 287.206 kb on - strand, within H281DRAFT_04170 at 287.692 kb on - strand at 287.694 kb on + strand at 287.785 kb on + strand at 287.904 kb on + strand, within H281DRAFT_04171 at 287.904 kb on + strand, within H281DRAFT_04171 at 287.904 kb on + strand, within H281DRAFT_04171 at 287.905 kb on - strand, within H281DRAFT_04171 at 288.172 kb on - strand, within H281DRAFT_04171 at 288.175 kb on + strand, within H281DRAFT_04171 at 288.354 kb on + strand, within H281DRAFT_04171 at 288.355 kb on - strand, within H281DRAFT_04171 at 288.508 kb on - strand, within H281DRAFT_04171 at 288.633 kb on + strand, within H281DRAFT_04171 at 288.633 kb on + strand, within H281DRAFT_04171 at 288.654 kb on + strand, within H281DRAFT_04171
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 283,833 + H281DRAFT_04169 0.60 -0.7 283,834 - H281DRAFT_04169 0.60 -0.7 283,834 - H281DRAFT_04169 0.60 +0.6 284,028 - H281DRAFT_04169 0.72 -0.1 284,538 + -0.7 284,538 + -0.2 284,539 - -1.6 284,539 - -0.5 284,539 - +0.8 284,647 + +0.0 285,246 + H281DRAFT_04170 0.25 -2.2 285,246 + H281DRAFT_04170 0.25 -1.9 285,247 - H281DRAFT_04170 0.25 -0.2 285,363 + H281DRAFT_04170 0.28 -0.8 285,377 - H281DRAFT_04170 0.29 -1.5 285,746 + H281DRAFT_04170 0.40 -1.2 285,777 + H281DRAFT_04170 0.41 -0.1 285,777 + H281DRAFT_04170 0.41 +1.8 285,778 - H281DRAFT_04170 0.41 -0.2 285,897 - H281DRAFT_04170 0.45 -0.7 285,897 - H281DRAFT_04170 0.45 -1.2 286,045 - H281DRAFT_04170 0.49 -0.8 286,275 + H281DRAFT_04170 0.57 -0.4 286,280 - +0.3 286,608 + H281DRAFT_04170 0.67 -0.2 286,609 - H281DRAFT_04170 0.67 +2.6 286,609 - H281DRAFT_04170 0.67 -2.0 286,728 + H281DRAFT_04170 0.71 -0.5 286,951 + H281DRAFT_04170 0.78 -2.4 287,205 + H281DRAFT_04170 0.85 +0.3 287,206 - H281DRAFT_04170 0.85 -1.1 287,206 - H281DRAFT_04170 0.85 -1.7 287,692 - +0.6 287,694 + +0.9 287,785 + +0.7 287,904 + H281DRAFT_04171 0.17 -0.3 287,904 + H281DRAFT_04171 0.17 -0.9 287,904 + H281DRAFT_04171 0.17 -1.2 287,905 - H281DRAFT_04171 0.17 -1.3 288,172 - H281DRAFT_04171 0.39 +0.2 288,175 + H281DRAFT_04171 0.39 +0.2 288,354 + H281DRAFT_04171 0.54 -0.0 288,355 - H281DRAFT_04171 0.54 -0.3 288,508 - H281DRAFT_04171 0.66 -1.0 288,633 + H281DRAFT_04171 0.76 +2.5 288,633 + H281DRAFT_04171 0.76 +0.6 288,654 + H281DRAFT_04171 0.78 -0.7
Or see this region's nucleotide sequence