Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04099 and H281DRAFT_04100 are separated by 71 nucleotides H281DRAFT_04100 and H281DRAFT_04101 are separated by 174 nucleotides H281DRAFT_04101 and H281DRAFT_04102 are separated by 371 nucleotides
H281DRAFT_04099: H281DRAFT_04099 - citrate synthase, at 207,395 to 208,624
_04099
H281DRAFT_04100: H281DRAFT_04100 - Protein of unknown function (DUF2917), at 208,696 to 209,001
_04100
H281DRAFT_04101: H281DRAFT_04101 - transcriptional regulator, GntR family, at 209,176 to 210,588
_04101
H281DRAFT_04102: H281DRAFT_04102 - drug resistance transporter, EmrB/QacA subfamily, at 210,960 to 212,345
_04102
Position (kb) 209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.207 kb on - strand, within H281DRAFT_04099 at 208.601 kb on + strand at 208.653 kb on - strand at 208.816 kb on - strand, within H281DRAFT_04100 at 208.871 kb on + strand, within H281DRAFT_04100 at 208.871 kb on + strand, within H281DRAFT_04100 at 209.034 kb on + strand at 209.063 kb on - strand at 209.317 kb on + strand at 209.317 kb on + strand at 209.350 kb on + strand, within H281DRAFT_04101 at 209.350 kb on + strand, within H281DRAFT_04101 at 209.351 kb on - strand, within H281DRAFT_04101 at 209.374 kb on + strand, within H281DRAFT_04101 at 209.404 kb on + strand, within H281DRAFT_04101 at 209.582 kb on + strand, within H281DRAFT_04101 at 209.624 kb on - strand, within H281DRAFT_04101 at 209.758 kb on + strand, within H281DRAFT_04101 at 209.758 kb on + strand, within H281DRAFT_04101 at 209.759 kb on - strand, within H281DRAFT_04101 at 209.759 kb on - strand, within H281DRAFT_04101 at 209.806 kb on + strand, within H281DRAFT_04101 at 209.807 kb on - strand, within H281DRAFT_04101 at 209.807 kb on - strand, within H281DRAFT_04101 at 209.807 kb on - strand, within H281DRAFT_04101 at 209.816 kb on - strand, within H281DRAFT_04101 at 209.924 kb on + strand, within H281DRAFT_04101 at 210.043 kb on + strand, within H281DRAFT_04101 at 210.110 kb on - strand, within H281DRAFT_04101 at 210.110 kb on - strand, within H281DRAFT_04101 at 210.112 kb on - strand, within H281DRAFT_04101 at 210.332 kb on + strand, within H281DRAFT_04101 at 210.478 kb on + strand at 210.478 kb on + strand at 210.479 kb on - strand at 210.753 kb on - strand at 210.846 kb on + strand at 211.090 kb on - strand at 211.218 kb on - strand, within H281DRAFT_04102 at 211.324 kb on - strand, within H281DRAFT_04102 at 211.403 kb on + strand, within H281DRAFT_04102
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 208,207 - H281DRAFT_04099 0.66 -0.1 208,601 + -1.1 208,653 - -1.1 208,816 - H281DRAFT_04100 0.39 -0.4 208,871 + H281DRAFT_04100 0.57 -0.6 208,871 + H281DRAFT_04100 0.57 -3.6 209,034 + -1.1 209,063 - -0.8 209,317 + -0.4 209,317 + +0.5 209,350 + H281DRAFT_04101 0.12 +0.2 209,350 + H281DRAFT_04101 0.12 +0.2 209,351 - H281DRAFT_04101 0.12 -0.1 209,374 + H281DRAFT_04101 0.14 +0.7 209,404 + H281DRAFT_04101 0.16 +0.3 209,582 + H281DRAFT_04101 0.29 -2.1 209,624 - H281DRAFT_04101 0.32 -0.4 209,758 + H281DRAFT_04101 0.41 +1.2 209,758 + H281DRAFT_04101 0.41 +0.3 209,759 - H281DRAFT_04101 0.41 +0.2 209,759 - H281DRAFT_04101 0.41 -2.1 209,806 + H281DRAFT_04101 0.45 -0.1 209,807 - H281DRAFT_04101 0.45 +0.6 209,807 - H281DRAFT_04101 0.45 -0.5 209,807 - H281DRAFT_04101 0.45 +0.5 209,816 - H281DRAFT_04101 0.45 -0.8 209,924 + H281DRAFT_04101 0.53 +2.1 210,043 + H281DRAFT_04101 0.61 -1.1 210,110 - H281DRAFT_04101 0.66 +1.4 210,110 - H281DRAFT_04101 0.66 +0.3 210,112 - H281DRAFT_04101 0.66 -2.8 210,332 + H281DRAFT_04101 0.82 +1.8 210,478 + -0.2 210,478 + -0.3 210,479 - -0.1 210,753 - -0.1 210,846 + -0.5 211,090 - -0.2 211,218 - H281DRAFT_04102 0.19 -1.1 211,324 - H281DRAFT_04102 0.26 -0.6 211,403 + H281DRAFT_04102 0.32 -2.8
Or see this region's nucleotide sequence