Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03965 and H281DRAFT_03966 are separated by 120 nucleotides H281DRAFT_03966 and H281DRAFT_03967 are separated by 60 nucleotides H281DRAFT_03967 and H281DRAFT_03968 are separated by 16 nucleotides
H281DRAFT_03965: H281DRAFT_03965 - guanine deaminase, at 71,070 to 72,434
_03965
H281DRAFT_03966: H281DRAFT_03966 - Dehydrogenase (flavoprotein), at 72,555 to 73,868
_03966
H281DRAFT_03967: H281DRAFT_03967 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 73,929 to 74,657
_03967
H281DRAFT_03968: H281DRAFT_03968 - hypothetical protein, at 74,674 to 75,117
_03968
Position (kb) 72
73
74 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 71.682 kb on + strand, within H281DRAFT_03965 at 71.844 kb on + strand, within H281DRAFT_03965 at 71.845 kb on - strand, within H281DRAFT_03965 at 71.857 kb on - strand, within H281DRAFT_03965 at 71.866 kb on - strand, within H281DRAFT_03965 at 71.866 kb on - strand, within H281DRAFT_03965 at 72.026 kb on + strand, within H281DRAFT_03965 at 72.026 kb on + strand, within H281DRAFT_03965 at 72.027 kb on - strand, within H281DRAFT_03965 at 72.153 kb on + strand, within H281DRAFT_03965 at 72.154 kb on - strand, within H281DRAFT_03965 at 72.357 kb on + strand at 72.473 kb on + strand at 72.474 kb on - strand at 72.474 kb on - strand at 72.478 kb on - strand at 72.478 kb on - strand at 72.525 kb on - strand at 72.525 kb on - strand at 72.613 kb on + strand at 72.614 kb on - strand at 72.692 kb on - strand, within H281DRAFT_03966 at 72.721 kb on + strand, within H281DRAFT_03966 at 72.722 kb on - strand, within H281DRAFT_03966 at 73.217 kb on - strand, within H281DRAFT_03966 at 73.217 kb on - strand, within H281DRAFT_03966 at 73.217 kb on - strand, within H281DRAFT_03966 at 73.314 kb on + strand, within H281DRAFT_03966 at 73.314 kb on + strand, within H281DRAFT_03966 at 73.415 kb on + strand, within H281DRAFT_03966 at 73.415 kb on + strand, within H281DRAFT_03966 at 73.416 kb on - strand, within H281DRAFT_03966 at 73.496 kb on - strand, within H281DRAFT_03966 at 73.859 kb on + strand at 73.860 kb on - strand at 73.882 kb on + strand at 73.896 kb on - strand at 73.904 kb on + strand at 73.904 kb on + strand at 73.904 kb on + strand at 73.904 kb on + strand at 73.904 kb on + strand at 73.905 kb on - strand at 73.905 kb on - strand at 73.905 kb on - strand at 73.905 kb on - strand at 73.905 kb on - strand at 73.905 kb on - strand at 73.909 kb on - strand at 73.909 kb on - strand at 74.170 kb on - strand, within H281DRAFT_03967 at 74.409 kb on + strand, within H281DRAFT_03967 at 74.409 kb on + strand, within H281DRAFT_03967 at 74.410 kb on - strand, within H281DRAFT_03967 at 74.410 kb on - strand, within H281DRAFT_03967 at 74.478 kb on + strand, within H281DRAFT_03967 at 74.539 kb on - strand, within H281DRAFT_03967 at 74.778 kb on - strand, within H281DRAFT_03968
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 71,682 + H281DRAFT_03965 0.45 -1.9 71,844 + H281DRAFT_03965 0.57 -0.8 71,845 - H281DRAFT_03965 0.57 +0.4 71,857 - H281DRAFT_03965 0.58 -0.4 71,866 - H281DRAFT_03965 0.58 -2.6 71,866 - H281DRAFT_03965 0.58 +0.1 72,026 + H281DRAFT_03965 0.70 -0.2 72,026 + H281DRAFT_03965 0.70 -0.3 72,027 - H281DRAFT_03965 0.70 +0.9 72,153 + H281DRAFT_03965 0.79 +1.1 72,154 - H281DRAFT_03965 0.79 -0.4 72,357 + +1.2 72,473 + +0.8 72,474 - -1.2 72,474 - -0.0 72,478 - +0.2 72,478 - +2.1 72,525 - -0.3 72,525 - +0.3 72,613 + +0.5 72,614 - +0.9 72,692 - H281DRAFT_03966 0.10 +0.3 72,721 + H281DRAFT_03966 0.13 +0.5 72,722 - H281DRAFT_03966 0.13 +0.2 73,217 - H281DRAFT_03966 0.50 -3.8 73,217 - H281DRAFT_03966 0.50 +0.4 73,217 - H281DRAFT_03966 0.50 +1.4 73,314 + H281DRAFT_03966 0.58 +1.1 73,314 + H281DRAFT_03966 0.58 -0.1 73,415 + H281DRAFT_03966 0.65 -0.1 73,415 + H281DRAFT_03966 0.65 -1.6 73,416 - H281DRAFT_03966 0.66 +1.5 73,496 - H281DRAFT_03966 0.72 +0.8 73,859 + -0.4 73,860 - -0.3 73,882 + +0.2 73,896 - +0.2 73,904 + +0.2 73,904 + -0.3 73,904 + -1.7 73,904 + -0.5 73,904 + +1.7 73,905 - -0.1 73,905 - -0.5 73,905 - +0.5 73,905 - +0.5 73,905 - +0.7 73,905 - -0.2 73,909 - -1.7 73,909 - +0.5 74,170 - H281DRAFT_03967 0.33 -0.4 74,409 + H281DRAFT_03967 0.66 -0.3 74,409 + H281DRAFT_03967 0.66 +1.5 74,410 - H281DRAFT_03967 0.66 -0.8 74,410 - H281DRAFT_03967 0.66 +0.5 74,478 + H281DRAFT_03967 0.75 +0.9 74,539 - H281DRAFT_03967 0.84 +0.3 74,778 - H281DRAFT_03968 0.23 -1.2
Or see this region's nucleotide sequence