Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03955 and H281DRAFT_03956 are separated by 169 nucleotides H281DRAFT_03956 and H281DRAFT_03957 are separated by 22 nucleotides
H281DRAFT_03955: H281DRAFT_03955 - transporter, CPA2 family, at 57,316 to 59,073
_03955
H281DRAFT_03956: H281DRAFT_03956 - Protein of unknown function (DUF2848), at 59,243 to 59,929
_03956
H281DRAFT_03957: H281DRAFT_03957 - D-galactonate transporter, at 59,952 to 61,301
_03957
Position (kb) 59
60 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 58.350 kb on - strand, within H281DRAFT_03955 at 58.350 kb on - strand, within H281DRAFT_03955 at 58.350 kb on - strand, within H281DRAFT_03955 at 58.350 kb on - strand, within H281DRAFT_03955 at 58.364 kb on - strand, within H281DRAFT_03955 at 58.439 kb on + strand, within H281DRAFT_03955 at 58.439 kb on + strand, within H281DRAFT_03955 at 58.439 kb on + strand, within H281DRAFT_03955 at 58.440 kb on - strand, within H281DRAFT_03955 at 58.440 kb on - strand, within H281DRAFT_03955 at 58.440 kb on - strand, within H281DRAFT_03955 at 58.440 kb on - strand, within H281DRAFT_03955 at 58.757 kb on + strand, within H281DRAFT_03955 at 58.763 kb on - strand, within H281DRAFT_03955 at 58.817 kb on - strand, within H281DRAFT_03955 at 58.937 kb on + strand at 58.938 kb on - strand at 58.967 kb on + strand at 58.967 kb on + strand at 58.968 kb on - strand at 59.096 kb on - strand at 59.118 kb on - strand at 59.269 kb on - strand at 59.307 kb on + strand at 59.308 kb on - strand at 59.420 kb on + strand, within H281DRAFT_03956 at 59.421 kb on - strand, within H281DRAFT_03956 at 59.679 kb on - strand, within H281DRAFT_03956 at 59.913 kb on + strand at 59.914 kb on - strand at 59.933 kb on - strand at 60.061 kb on - strand at 60.061 kb on - strand at 60.096 kb on + strand, within H281DRAFT_03957 at 60.177 kb on + strand, within H281DRAFT_03957 at 60.185 kb on - strand, within H281DRAFT_03957 at 60.310 kb on - strand, within H281DRAFT_03957 at 60.310 kb on - strand, within H281DRAFT_03957 at 60.369 kb on + strand, within H281DRAFT_03957 at 60.369 kb on + strand, within H281DRAFT_03957 at 60.370 kb on - strand, within H281DRAFT_03957 at 60.370 kb on - strand, within H281DRAFT_03957 at 60.632 kb on - strand, within H281DRAFT_03957 at 60.689 kb on + strand, within H281DRAFT_03957 at 60.689 kb on + strand, within H281DRAFT_03957 at 60.689 kb on + strand, within H281DRAFT_03957 at 60.689 kb on + strand, within H281DRAFT_03957 at 60.741 kb on + strand, within H281DRAFT_03957 at 60.741 kb on + strand, within H281DRAFT_03957 at 60.741 kb on + strand, within H281DRAFT_03957 at 60.742 kb on - strand, within H281DRAFT_03957 at 60.924 kb on + strand, within H281DRAFT_03957
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 58,350 - H281DRAFT_03955 0.59 -3.9 58,350 - H281DRAFT_03955 0.59 -0.7 58,350 - H281DRAFT_03955 0.59 -0.4 58,350 - H281DRAFT_03955 0.59 +0.4 58,364 - H281DRAFT_03955 0.60 -1.1 58,439 + H281DRAFT_03955 0.64 -0.0 58,439 + H281DRAFT_03955 0.64 -0.4 58,439 + H281DRAFT_03955 0.64 +0.3 58,440 - H281DRAFT_03955 0.64 -0.2 58,440 - H281DRAFT_03955 0.64 +0.0 58,440 - H281DRAFT_03955 0.64 -0.5 58,440 - H281DRAFT_03955 0.64 -0.4 58,757 + H281DRAFT_03955 0.82 -3.1 58,763 - H281DRAFT_03955 0.82 -0.2 58,817 - H281DRAFT_03955 0.85 -0.2 58,937 + -0.1 58,938 - -0.3 58,967 + +0.9 58,967 + -0.5 58,968 - -0.8 59,096 - -0.8 59,118 - +0.8 59,269 - +1.4 59,307 + +1.0 59,308 - -0.8 59,420 + H281DRAFT_03956 0.26 -0.8 59,421 - H281DRAFT_03956 0.26 -0.3 59,679 - H281DRAFT_03956 0.63 +0.3 59,913 + +0.4 59,914 - -1.2 59,933 - +0.4 60,061 - +0.2 60,061 - -1.1 60,096 + H281DRAFT_03957 0.11 +0.8 60,177 + H281DRAFT_03957 0.17 +0.7 60,185 - H281DRAFT_03957 0.17 +0.1 60,310 - H281DRAFT_03957 0.27 +0.3 60,310 - H281DRAFT_03957 0.27 +0.4 60,369 + H281DRAFT_03957 0.31 +0.0 60,369 + H281DRAFT_03957 0.31 -0.4 60,370 - H281DRAFT_03957 0.31 +0.7 60,370 - H281DRAFT_03957 0.31 -0.1 60,632 - H281DRAFT_03957 0.50 +0.2 60,689 + H281DRAFT_03957 0.55 +0.0 60,689 + H281DRAFT_03957 0.55 -0.9 60,689 + H281DRAFT_03957 0.55 +1.1 60,689 + H281DRAFT_03957 0.55 +0.7 60,741 + H281DRAFT_03957 0.58 +0.1 60,741 + H281DRAFT_03957 0.58 -0.3 60,741 + H281DRAFT_03957 0.58 +0.6 60,742 - H281DRAFT_03957 0.59 +0.7 60,924 + H281DRAFT_03957 0.72 +0.1
Or see this region's nucleotide sequence