Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03779 and H281DRAFT_03780 overlap by 23 nucleotides H281DRAFT_03780 and H281DRAFT_03781 are separated by 37 nucleotides H281DRAFT_03781 and H281DRAFT_03782 are separated by 39 nucleotides
H281DRAFT_03779: H281DRAFT_03779 - Forkhead associated (FHA) domain, binds pSer, pThr, pTyr, at 297,447 to 300,056
_03779
H281DRAFT_03780: H281DRAFT_03780 - HlyD family secretion protein, at 300,034 to 301,407
_03780
H281DRAFT_03781: H281DRAFT_03781 - Parvulin-like peptidyl-prolyl isomerase, at 301,445 to 302,197
_03781
H281DRAFT_03782: H281DRAFT_03782 - bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39, at 302,237 to 305,296
_03782
Position (kb) 300
301
302 Strain fitness (log2 ratio) -1
0
1
2
3 at 299.050 kb on - strand, within H281DRAFT_03779 at 299.050 kb on - strand, within H281DRAFT_03779 at 299.054 kb on - strand, within H281DRAFT_03779 at 299.054 kb on - strand, within H281DRAFT_03779 at 299.413 kb on + strand at 299.870 kb on + strand at 299.871 kb on - strand at 299.871 kb on - strand at 299.871 kb on - strand at 299.998 kb on + strand at 300.055 kb on - strand at 300.179 kb on + strand, within H281DRAFT_03780 at 300.260 kb on - strand, within H281DRAFT_03780 at 300.292 kb on + strand, within H281DRAFT_03780 at 301.207 kb on - strand, within H281DRAFT_03780 at 301.286 kb on - strand at 301.788 kb on - strand, within H281DRAFT_03781 at 301.959 kb on + strand, within H281DRAFT_03781 at 302.405 kb on + strand at 302.405 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 299,050 - H281DRAFT_03779 0.61 +0.3 299,050 - H281DRAFT_03779 0.61 +2.9 299,054 - H281DRAFT_03779 0.62 +1.0 299,054 - H281DRAFT_03779 0.62 +0.1 299,413 + +1.3 299,870 + -0.7 299,871 - +0.2 299,871 - +0.4 299,871 - +0.7 299,998 + +0.3 300,055 - -1.4 300,179 + H281DRAFT_03780 0.11 -0.8 300,260 - H281DRAFT_03780 0.16 +0.0 300,292 + H281DRAFT_03780 0.19 -0.1 301,207 - H281DRAFT_03780 0.85 +0.3 301,286 - +0.8 301,788 - H281DRAFT_03781 0.46 -0.7 301,959 + H281DRAFT_03781 0.68 -0.2 302,405 + +0.4 302,405 + -1.0
Or see this region's nucleotide sequence