Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03778 and H281DRAFT_03779 are separated by 257 nucleotides H281DRAFT_03779 and H281DRAFT_03780 overlap by 23 nucleotides
H281DRAFT_03778: H281DRAFT_03778 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 295,666 to 297,189
_03778
H281DRAFT_03779: H281DRAFT_03779 - Forkhead associated (FHA) domain, binds pSer, pThr, pTyr, at 297,447 to 300,056
_03779
H281DRAFT_03780: H281DRAFT_03780 - HlyD family secretion protein, at 300,034 to 301,407
_03780
Position (kb) 297
298
299
300
301 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 297.201 kb on - strand at 297.681 kb on + strand at 298.620 kb on + strand, within H281DRAFT_03779 at 298.620 kb on + strand, within H281DRAFT_03779 at 299.050 kb on - strand, within H281DRAFT_03779 at 299.050 kb on - strand, within H281DRAFT_03779 at 299.054 kb on - strand, within H281DRAFT_03779 at 299.054 kb on - strand, within H281DRAFT_03779 at 299.413 kb on + strand at 299.870 kb on + strand at 299.871 kb on - strand at 299.871 kb on - strand at 299.871 kb on - strand at 299.998 kb on + strand at 300.055 kb on - strand at 300.179 kb on + strand, within H281DRAFT_03780 at 300.260 kb on - strand, within H281DRAFT_03780 at 300.292 kb on + strand, within H281DRAFT_03780
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 297,201 - -4.1 297,681 + +0.9 298,620 + H281DRAFT_03779 0.45 +2.5 298,620 + H281DRAFT_03779 0.45 -0.5 299,050 - H281DRAFT_03779 0.61 +0.3 299,050 - H281DRAFT_03779 0.61 +2.9 299,054 - H281DRAFT_03779 0.62 +1.0 299,054 - H281DRAFT_03779 0.62 +0.1 299,413 + +1.3 299,870 + -0.7 299,871 - +0.2 299,871 - +0.4 299,871 - +0.7 299,998 + +0.3 300,055 - -1.4 300,179 + H281DRAFT_03780 0.11 -0.8 300,260 - H281DRAFT_03780 0.16 +0.0 300,292 + H281DRAFT_03780 0.19 -0.1
Or see this region's nucleotide sequence