Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03639 and H281DRAFT_03640 are separated by 0 nucleotides H281DRAFT_03640 and H281DRAFT_03641 overlap by 4 nucleotides H281DRAFT_03641 and H281DRAFT_03642 overlap by 32 nucleotides
H281DRAFT_03639: H281DRAFT_03639 - Pimeloyl-ACP methyl ester carboxylesterase, at 147,330 to 148,223
_03639
H281DRAFT_03640: H281DRAFT_03640 - transcriptional regulator, IclR family, at 148,224 to 149,108
_03640
H281DRAFT_03641: H281DRAFT_03641 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 149,105 to 149,914
_03641
H281DRAFT_03642: H281DRAFT_03642 - acetolactate synthase-1/2/3 large subunit, at 149,883 to 151,565
_03642
Position (kb) 149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.733 kb on + strand, within H281DRAFT_03640 at 148.734 kb on - strand, within H281DRAFT_03640 at 149.009 kb on - strand, within H281DRAFT_03640 at 149.459 kb on + strand, within H281DRAFT_03641 at 149.581 kb on + strand, within H281DRAFT_03641 at 149.582 kb on - strand, within H281DRAFT_03641 at 149.793 kb on + strand, within H281DRAFT_03641 at 149.838 kb on - strand at 150.229 kb on - strand, within H281DRAFT_03642 at 150.760 kb on - strand, within H281DRAFT_03642 at 150.882 kb on - strand, within H281DRAFT_03642
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 148,733 + H281DRAFT_03640 0.58 -2.6 148,734 - H281DRAFT_03640 0.58 +0.2 149,009 - H281DRAFT_03640 0.89 -0.3 149,459 + H281DRAFT_03641 0.44 -0.8 149,581 + H281DRAFT_03641 0.59 +1.0 149,582 - H281DRAFT_03641 0.59 -0.1 149,793 + H281DRAFT_03641 0.85 +0.9 149,838 - +1.0 150,229 - H281DRAFT_03642 0.21 +0.5 150,760 - H281DRAFT_03642 0.52 +2.6 150,882 - H281DRAFT_03642 0.59 +1.0
Or see this region's nucleotide sequence