Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03544 and H281DRAFT_03545 are separated by 78 nucleotides H281DRAFT_03545 and H281DRAFT_03546 are separated by 543 nucleotides H281DRAFT_03546 and H281DRAFT_03547 are separated by 87 nucleotides
H281DRAFT_03544: H281DRAFT_03544 - CubicO group peptidase, beta-lactamase class C family, at 44,955 to 46,154
_03544
H281DRAFT_03545: H281DRAFT_03545 - hypothetical protein, at 46,233 to 46,436
_03545
H281DRAFT_03546: H281DRAFT_03546 - hypothetical protein, at 46,980 to 47,240
_03546
H281DRAFT_03547: H281DRAFT_03547 - Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains, at 47,328 to 48,809
_03547
Position (kb) 46
47
48 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 46.093 kb on + strand at 46.093 kb on + strand at 46.093 kb on + strand at 46.094 kb on - strand at 46.160 kb on + strand at 46.175 kb on + strand at 46.176 kb on - strand at 46.274 kb on + strand, within H281DRAFT_03545 at 46.275 kb on - strand, within H281DRAFT_03545 at 46.275 kb on - strand, within H281DRAFT_03545 at 46.341 kb on - strand, within H281DRAFT_03545 at 46.348 kb on + strand, within H281DRAFT_03545 at 46.452 kb on - strand at 46.464 kb on - strand at 46.510 kb on + strand at 46.510 kb on + strand at 46.510 kb on + strand at 46.511 kb on - strand at 46.511 kb on - strand at 46.557 kb on - strand at 46.612 kb on + strand at 46.612 kb on + strand at 46.639 kb on - strand at 46.705 kb on - strand at 46.730 kb on + strand at 46.772 kb on + strand at 46.773 kb on - strand at 46.773 kb on - strand at 46.780 kb on + strand at 46.780 kb on + strand at 46.781 kb on - strand at 46.781 kb on - strand at 46.782 kb on + strand at 46.782 kb on + strand at 46.782 kb on + strand at 46.782 kb on + strand at 46.782 kb on + strand at 46.782 kb on + strand at 46.782 kb on + strand at 46.783 kb on - strand at 46.783 kb on - strand at 46.783 kb on - strand at 46.783 kb on - strand at 46.783 kb on - strand at 46.783 kb on - strand at 46.783 kb on - strand at 46.786 kb on + strand at 46.787 kb on - strand at 46.827 kb on + strand at 46.827 kb on + strand at 46.827 kb on + strand at 46.827 kb on + strand at 46.869 kb on - strand at 46.883 kb on + strand at 46.981 kb on + strand at 46.982 kb on - strand at 46.982 kb on - strand at 46.982 kb on - strand at 46.999 kb on + strand at 46.999 kb on + strand at 47.000 kb on - strand at 47.000 kb on - strand at 47.363 kb on - strand at 47.547 kb on + strand, within H281DRAFT_03547 at 47.654 kb on + strand, within H281DRAFT_03547 at 47.728 kb on + strand, within H281DRAFT_03547 at 47.835 kb on + strand, within H281DRAFT_03547 at 47.836 kb on - strand, within H281DRAFT_03547 at 47.836 kb on - strand, within H281DRAFT_03547 at 47.848 kb on + strand, within H281DRAFT_03547 at 48.015 kb on - strand, within H281DRAFT_03547 at 48.097 kb on + strand, within H281DRAFT_03547 at 48.097 kb on + strand, within H281DRAFT_03547 at 48.098 kb on - strand, within H281DRAFT_03547
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 46,093 + +1.0 46,093 + +0.5 46,093 + -0.4 46,094 - +0.3 46,160 + -0.7 46,175 + +0.5 46,176 - -0.3 46,274 + H281DRAFT_03545 0.20 +0.3 46,275 - H281DRAFT_03545 0.21 +0.9 46,275 - H281DRAFT_03545 0.21 +0.1 46,341 - H281DRAFT_03545 0.53 -0.6 46,348 + H281DRAFT_03545 0.56 +0.9 46,452 - +0.5 46,464 - -2.0 46,510 + -2.2 46,510 + -0.5 46,510 + -0.4 46,511 - +0.2 46,511 - +0.5 46,557 - -1.2 46,612 + +0.1 46,612 + -0.4 46,639 - -0.0 46,705 - -1.5 46,730 + +0.8 46,772 + +0.1 46,773 - +0.2 46,773 - -0.5 46,780 + -0.3 46,780 + +2.0 46,781 - -0.3 46,781 - +0.3 46,782 + -0.4 46,782 + +0.6 46,782 + -1.7 46,782 + -0.6 46,782 + +0.2 46,782 + -1.5 46,782 + +0.7 46,783 - -0.1 46,783 - +0.1 46,783 - +0.2 46,783 - +0.0 46,783 - +0.5 46,783 - +0.2 46,783 - -0.8 46,786 + +0.1 46,787 - +0.2 46,827 + -3.7 46,827 + +0.1 46,827 + +0.9 46,827 + -0.3 46,869 - +0.5 46,883 + -0.4 46,981 + -1.5 46,982 - +0.5 46,982 - -3.9 46,982 - +0.5 46,999 + -0.2 46,999 + -1.2 47,000 - -0.2 47,000 - +0.7 47,363 - +0.3 47,547 + H281DRAFT_03547 0.15 -0.2 47,654 + H281DRAFT_03547 0.22 +0.2 47,728 + H281DRAFT_03547 0.27 -1.7 47,835 + H281DRAFT_03547 0.34 -0.1 47,836 - H281DRAFT_03547 0.34 -1.0 47,836 - H281DRAFT_03547 0.34 -1.3 47,848 + H281DRAFT_03547 0.35 +0.8 48,015 - H281DRAFT_03547 0.46 -0.4 48,097 + H281DRAFT_03547 0.52 +1.4 48,097 + H281DRAFT_03547 0.52 -1.0 48,098 - H281DRAFT_03547 0.52 +0.3
Or see this region's nucleotide sequence