Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03485 and H281DRAFT_03486 overlap by 4 nucleotides H281DRAFT_03486 and H281DRAFT_03487 are separated by 36 nucleotides H281DRAFT_03487 and H281DRAFT_03488 are separated by 35 nucleotides H281DRAFT_03488 and H281DRAFT_03489 are separated by 13 nucleotides
H281DRAFT_03485: H281DRAFT_03485 - osmoprotectant transport system ATP-binding protein, at 569,685 to 570,803
_03485
H281DRAFT_03486: H281DRAFT_03486 - osmoprotectant transport system permease protein, at 570,800 to 571,519
_03486
H281DRAFT_03487: H281DRAFT_03487 - osmoprotectant transport system substrate-binding protein, at 571,556 to 572,452
_03487
H281DRAFT_03488: H281DRAFT_03488 - Predicted amidohydrolase, at 572,488 to 573,366
_03488
H281DRAFT_03489: H281DRAFT_03489 - Acyl-CoA dehydrogenase, at 573,380 to 574,567
_03489
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 570.653 kb on + strand, within H281DRAFT_03485 at 570.713 kb on + strand at 570.714 kb on - strand at 570.806 kb on - strand at 570.990 kb on - strand, within H281DRAFT_03486 at 571.101 kb on + strand, within H281DRAFT_03486 at 571.251 kb on + strand, within H281DRAFT_03486 at 571.315 kb on + strand, within H281DRAFT_03486 at 571.624 kb on + strand at 571.704 kb on + strand, within H281DRAFT_03487 at 571.830 kb on - strand, within H281DRAFT_03487 at 571.830 kb on - strand, within H281DRAFT_03487 at 571.869 kb on - strand, within H281DRAFT_03487 at 571.869 kb on - strand, within H281DRAFT_03487 at 572.096 kb on + strand, within H281DRAFT_03487 at 572.755 kb on - strand, within H281DRAFT_03488 at 572.797 kb on + strand, within H281DRAFT_03488 at 572.798 kb on - strand, within H281DRAFT_03488
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 570,653 + H281DRAFT_03485 0.87 +0.5 570,713 + -2.3 570,714 - +2.3 570,806 - +0.6 570,990 - H281DRAFT_03486 0.26 +0.4 571,101 + H281DRAFT_03486 0.42 -0.2 571,251 + H281DRAFT_03486 0.63 +1.2 571,315 + H281DRAFT_03486 0.72 -0.1 571,624 + -0.2 571,704 + H281DRAFT_03487 0.16 -0.2 571,830 - H281DRAFT_03487 0.31 +0.8 571,830 - H281DRAFT_03487 0.31 -0.2 571,869 - H281DRAFT_03487 0.35 -0.8 571,869 - H281DRAFT_03487 0.35 -0.9 572,096 + H281DRAFT_03487 0.60 -0.1 572,755 - H281DRAFT_03488 0.30 +0.1 572,797 + H281DRAFT_03488 0.35 -1.3 572,798 - H281DRAFT_03488 0.35 -1.0
Or see this region's nucleotide sequence