Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03408 and H281DRAFT_03409 are separated by 190 nucleotides H281DRAFT_03409 and H281DRAFT_03410 are separated by 124 nucleotides H281DRAFT_03410 and H281DRAFT_03411 are separated by 203 nucleotides H281DRAFT_03411 and H281DRAFT_03412 are separated by 99 nucleotides
H281DRAFT_03408: H281DRAFT_03408 - Transmembrane transcriptional regulator (anti-sigma factor RsiW), at 478,704 to 479,567
_03408
H281DRAFT_03409: H281DRAFT_03409 - Protein of unknown function (DUF3072), at 479,758 to 480,030
_03409
H281DRAFT_03410: H281DRAFT_03410 - Two-component sensor histidine kinase, contains HisKA and HATPase domains, at 480,155 to 481,546
_03410
H281DRAFT_03411: H281DRAFT_03411 - hypothetical protein, at 481,750 to 482,340
_03411
H281DRAFT_03412: H281DRAFT_03412 - Glycine-zipper containing OmpA-like membrane domain-containing protein, at 482,440 to 482,913
_03412
Position (kb) 480
481
482 Strain fitness (log2 ratio) -1
0
1
2 at 479.660 kb on - strand at 479.914 kb on + strand, within H281DRAFT_03409 at 480.052 kb on + strand at 480.052 kb on + strand at 480.052 kb on + strand at 480.075 kb on + strand at 480.156 kb on + strand at 480.156 kb on + strand at 480.156 kb on + strand at 480.348 kb on - strand, within H281DRAFT_03410 at 480.430 kb on + strand, within H281DRAFT_03410 at 480.430 kb on + strand, within H281DRAFT_03410 at 480.485 kb on - strand, within H281DRAFT_03410 at 480.594 kb on + strand, within H281DRAFT_03410 at 480.713 kb on - strand, within H281DRAFT_03410 at 480.717 kb on - strand, within H281DRAFT_03410 at 480.790 kb on - strand, within H281DRAFT_03410 at 481.095 kb on + strand, within H281DRAFT_03410 at 481.096 kb on - strand, within H281DRAFT_03410 at 481.855 kb on + strand, within H281DRAFT_03411 at 482.067 kb on - strand, within H281DRAFT_03411
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 479,660 - -0.3 479,914 + H281DRAFT_03409 0.57 -0.7 480,052 + +1.7 480,052 + +0.4 480,052 + -1.4 480,075 + +0.6 480,156 + -0.7 480,156 + -0.7 480,156 + +2.5 480,348 - H281DRAFT_03410 0.14 +1.5 480,430 + H281DRAFT_03410 0.20 +1.0 480,430 + H281DRAFT_03410 0.20 -0.0 480,485 - H281DRAFT_03410 0.24 +0.3 480,594 + H281DRAFT_03410 0.32 -0.2 480,713 - H281DRAFT_03410 0.40 -0.2 480,717 - H281DRAFT_03410 0.40 +0.4 480,790 - H281DRAFT_03410 0.46 +0.2 481,095 + H281DRAFT_03410 0.68 -0.0 481,096 - H281DRAFT_03410 0.68 +0.2 481,855 + H281DRAFT_03411 0.18 -0.9 482,067 - H281DRAFT_03411 0.54 -0.5
Or see this region's nucleotide sequence