Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03363 and H281DRAFT_03364 overlap by 8 nucleotides H281DRAFT_03364 and H281DRAFT_03365 overlap by 4 nucleotides
H281DRAFT_03363: H281DRAFT_03363 - fumarate reductase (CoM/CoB) subunit A, at 422,826 to 424,604
_03363
H281DRAFT_03364: H281DRAFT_03364 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 424,597 to 425,820
_03364
H281DRAFT_03365: H281DRAFT_03365 - choline dehydrogenase, at 425,817 to 427,457
_03365
Position (kb) 424
425
426 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 423.672 kb on + strand, within H281DRAFT_03363 at 424.211 kb on + strand, within H281DRAFT_03363 at 424.212 kb on - strand, within H281DRAFT_03363 at 424.412 kb on + strand, within H281DRAFT_03363 at 424.636 kb on - strand at 425.005 kb on + strand, within H281DRAFT_03364 at 425.162 kb on + strand, within H281DRAFT_03364 at 425.199 kb on + strand, within H281DRAFT_03364 at 425.320 kb on + strand, within H281DRAFT_03364 at 425.320 kb on + strand, within H281DRAFT_03364 at 425.342 kb on - strand, within H281DRAFT_03364 at 425.512 kb on + strand, within H281DRAFT_03364 at 425.567 kb on - strand, within H281DRAFT_03364 at 425.713 kb on - strand at 425.727 kb on + strand at 425.750 kb on - strand at 425.750 kb on - strand at 426.134 kb on + strand, within H281DRAFT_03365 at 426.482 kb on + strand, within H281DRAFT_03365 at 426.482 kb on + strand, within H281DRAFT_03365 at 426.708 kb on + strand, within H281DRAFT_03365
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 423,672 + H281DRAFT_03363 0.48 -0.5 424,211 + H281DRAFT_03363 0.78 +0.3 424,212 - H281DRAFT_03363 0.78 +0.1 424,412 + H281DRAFT_03363 0.89 +2.3 424,636 - -0.9 425,005 + H281DRAFT_03364 0.33 -0.8 425,162 + H281DRAFT_03364 0.46 +0.1 425,199 + H281DRAFT_03364 0.49 +1.8 425,320 + H281DRAFT_03364 0.59 +0.3 425,320 + H281DRAFT_03364 0.59 +3.2 425,342 - H281DRAFT_03364 0.61 -0.7 425,512 + H281DRAFT_03364 0.75 -0.4 425,567 - H281DRAFT_03364 0.79 -0.3 425,713 - +0.1 425,727 + -2.4 425,750 - -0.7 425,750 - +0.5 426,134 + H281DRAFT_03365 0.19 -0.7 426,482 + H281DRAFT_03365 0.41 +0.1 426,482 + H281DRAFT_03365 0.41 +0.8 426,708 + H281DRAFT_03365 0.54 +0.1
Or see this region's nucleotide sequence