Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03347 and H281DRAFT_03348 overlap by 4 nucleotides H281DRAFT_03348 and H281DRAFT_03349 overlap by 4 nucleotides H281DRAFT_03349 and H281DRAFT_03350 are separated by 17 nucleotides
H281DRAFT_03347: H281DRAFT_03347 - formiminoglutamase, at 406,657 to 407,625
_03347
H281DRAFT_03348: H281DRAFT_03348 - amino acid ABC transporter ATP-binding protein, PAAT family, at 407,622 to 408,398
_03348
H281DRAFT_03349: H281DRAFT_03349 - amino acid ABC transporter membrane protein, PAAT family, at 408,395 to 409,063
_03349
H281DRAFT_03350: H281DRAFT_03350 - amino acid ABC transporter substrate-binding protein, PAAT family, at 409,081 to 409,836
_03350
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 406.728 kb on - strand at 406.878 kb on - strand, within H281DRAFT_03347 at 406.879 kb on + strand, within H281DRAFT_03347 at 406.879 kb on + strand, within H281DRAFT_03347 at 406.879 kb on + strand, within H281DRAFT_03347 at 406.879 kb on + strand, within H281DRAFT_03347 at 406.957 kb on + strand at 406.996 kb on + strand, within H281DRAFT_03347 at 407.039 kb on + strand, within H281DRAFT_03347 at 407.039 kb on + strand, within H281DRAFT_03347 at 407.040 kb on - strand, within H281DRAFT_03347 at 408.065 kb on + strand, within H281DRAFT_03348 at 408.227 kb on + strand, within H281DRAFT_03348 at 408.475 kb on - strand, within H281DRAFT_03349 at 408.496 kb on - strand, within H281DRAFT_03349 at 409.125 kb on - strand at 409.209 kb on - strand, within H281DRAFT_03350 at 409.238 kb on - strand, within H281DRAFT_03350 at 409.238 kb on - strand, within H281DRAFT_03350
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 406,728 - -3.4 406,878 - H281DRAFT_03347 0.23 +0.6 406,879 + H281DRAFT_03347 0.23 +0.4 406,879 + H281DRAFT_03347 0.23 +0.3 406,879 + H281DRAFT_03347 0.23 -0.5 406,879 + H281DRAFT_03347 0.23 +0.4 406,957 + +1.7 406,996 + H281DRAFT_03347 0.35 +0.5 407,039 + H281DRAFT_03347 0.39 +0.6 407,039 + H281DRAFT_03347 0.39 -0.2 407,040 - H281DRAFT_03347 0.40 -0.4 408,065 + H281DRAFT_03348 0.57 -2.9 408,227 + H281DRAFT_03348 0.78 -0.3 408,475 - H281DRAFT_03349 0.12 +1.5 408,496 - H281DRAFT_03349 0.15 +2.0 409,125 - +0.1 409,209 - H281DRAFT_03350 0.17 -1.0 409,238 - H281DRAFT_03350 0.21 -0.5 409,238 - H281DRAFT_03350 0.21 -0.9
Or see this region's nucleotide sequence