Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03346 and H281DRAFT_03347 are separated by 140 nucleotides H281DRAFT_03347 and H281DRAFT_03348 overlap by 4 nucleotides H281DRAFT_03348 and H281DRAFT_03349 overlap by 4 nucleotides
H281DRAFT_03346: H281DRAFT_03346 - Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family, at 405,644 to 406,516
_03346
H281DRAFT_03347: H281DRAFT_03347 - formiminoglutamase, at 406,657 to 407,625
_03347
H281DRAFT_03348: H281DRAFT_03348 - amino acid ABC transporter ATP-binding protein, PAAT family, at 407,622 to 408,398
_03348
H281DRAFT_03349: H281DRAFT_03349 - amino acid ABC transporter membrane protein, PAAT family, at 408,395 to 409,063
_03349
Position (kb) 406
407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 405.940 kb on + strand, within H281DRAFT_03346 at 406.572 kb on + strand at 406.728 kb on - strand at 406.878 kb on - strand, within H281DRAFT_03347 at 406.879 kb on + strand, within H281DRAFT_03347 at 406.879 kb on + strand, within H281DRAFT_03347 at 406.879 kb on + strand, within H281DRAFT_03347 at 406.879 kb on + strand, within H281DRAFT_03347 at 406.957 kb on + strand at 406.996 kb on + strand, within H281DRAFT_03347 at 407.039 kb on + strand, within H281DRAFT_03347 at 407.039 kb on + strand, within H281DRAFT_03347 at 407.040 kb on - strand, within H281DRAFT_03347 at 408.065 kb on + strand, within H281DRAFT_03348 at 408.227 kb on + strand, within H281DRAFT_03348 at 408.475 kb on - strand, within H281DRAFT_03349 at 408.496 kb on - strand, within H281DRAFT_03349
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 405,940 + H281DRAFT_03346 0.34 -0.4 406,572 + +0.2 406,728 - -3.4 406,878 - H281DRAFT_03347 0.23 +0.6 406,879 + H281DRAFT_03347 0.23 +0.4 406,879 + H281DRAFT_03347 0.23 +0.3 406,879 + H281DRAFT_03347 0.23 -0.5 406,879 + H281DRAFT_03347 0.23 +0.4 406,957 + +1.7 406,996 + H281DRAFT_03347 0.35 +0.5 407,039 + H281DRAFT_03347 0.39 +0.6 407,039 + H281DRAFT_03347 0.39 -0.2 407,040 - H281DRAFT_03347 0.40 -0.4 408,065 + H281DRAFT_03348 0.57 -2.9 408,227 + H281DRAFT_03348 0.78 -0.3 408,475 - H281DRAFT_03349 0.12 +1.5 408,496 - H281DRAFT_03349 0.15 +2.0
Or see this region's nucleotide sequence