Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03306 and H281DRAFT_03307 overlap by 4 nucleotides H281DRAFT_03307 and H281DRAFT_03308 overlap by 28 nucleotides H281DRAFT_03308 and H281DRAFT_03309 are separated by 12 nucleotides H281DRAFT_03309 and H281DRAFT_03310 overlap by 4 nucleotides
H281DRAFT_03306: H281DRAFT_03306 - Cytochrome c, mono- and diheme variants, at 368,813 to 370,117
_03306
H281DRAFT_03307: H281DRAFT_03307 - Cytochrome c oxidase assembly factor CtaG, at 370,114 to 371,082
_03307
H281DRAFT_03308: H281DRAFT_03308 - hypothetical protein, at 371,055 to 371,387
_03308
H281DRAFT_03309: H281DRAFT_03309 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 371,400 to 372,050
_03309
H281DRAFT_03310: H281DRAFT_03310 - cytochrome c oxidase subunit 1, at 372,047 to 373,996
_03310
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1 at 369.718 kb on - strand, within H281DRAFT_03306 at 369.907 kb on + strand, within H281DRAFT_03306 at 370.217 kb on + strand, within H281DRAFT_03307 at 370.740 kb on + strand, within H281DRAFT_03307 at 371.076 kb on - strand at 371.323 kb on + strand, within H281DRAFT_03308 at 371.324 kb on - strand, within H281DRAFT_03308 at 371.419 kb on + strand at 371.431 kb on + strand at 371.452 kb on - strand at 371.861 kb on - strand, within H281DRAFT_03309 at 371.866 kb on + strand, within H281DRAFT_03309
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 369,718 - H281DRAFT_03306 0.69 -1.6 369,907 + H281DRAFT_03306 0.84 +1.1 370,217 + H281DRAFT_03307 0.11 -1.8 370,740 + H281DRAFT_03307 0.65 -0.4 371,076 - +0.3 371,323 + H281DRAFT_03308 0.80 +0.3 371,324 - H281DRAFT_03308 0.81 +1.0 371,419 + -0.0 371,431 + +0.5 371,452 - +1.6 371,861 - H281DRAFT_03309 0.71 +0.5 371,866 + H281DRAFT_03309 0.72 +0.4
Or see this region's nucleotide sequence