Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03133 and H281DRAFT_03134 are separated by 409 nucleotides H281DRAFT_03134 and H281DRAFT_03135 are separated by 141 nucleotides
H281DRAFT_03133: H281DRAFT_03133 - DNA-binding protein, at 169,113 to 169,565
_03133
H281DRAFT_03134: H281DRAFT_03134 - Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily, at 169,975 to 171,384
_03134
H281DRAFT_03135: H281DRAFT_03135 - Uncharacterized conserved protein, Alpha-E superfamily, at 171,526 to 172,476
_03135
Position (kb) 169
170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 169.001 kb on - strand at 169.001 kb on - strand at 169.002 kb on + strand at 169.002 kb on + strand at 169.002 kb on + strand at 169.003 kb on - strand at 169.006 kb on + strand at 169.006 kb on + strand at 169.064 kb on + strand at 169.065 kb on - strand at 169.563 kb on + strand at 169.564 kb on - strand at 169.656 kb on - strand at 169.725 kb on + strand at 169.787 kb on - strand at 169.812 kb on + strand at 169.985 kb on - strand at 170.027 kb on - strand at 170.121 kb on + strand, within H281DRAFT_03134 at 170.273 kb on - strand, within H281DRAFT_03134 at 170.326 kb on - strand, within H281DRAFT_03134 at 170.389 kb on - strand, within H281DRAFT_03134 at 170.435 kb on - strand, within H281DRAFT_03134 at 170.435 kb on - strand, within H281DRAFT_03134 at 170.476 kb on + strand, within H281DRAFT_03134 at 170.476 kb on + strand, within H281DRAFT_03134 at 170.522 kb on + strand, within H281DRAFT_03134 at 170.528 kb on + strand, within H281DRAFT_03134 at 170.628 kb on - strand, within H281DRAFT_03134 at 170.644 kb on + strand, within H281DRAFT_03134 at 170.645 kb on - strand, within H281DRAFT_03134 at 170.734 kb on + strand, within H281DRAFT_03134 at 170.734 kb on + strand, within H281DRAFT_03134 at 170.734 kb on + strand, within H281DRAFT_03134 at 170.735 kb on - strand, within H281DRAFT_03134 at 170.735 kb on - strand, within H281DRAFT_03134 at 170.735 kb on - strand, within H281DRAFT_03134 at 170.735 kb on - strand, within H281DRAFT_03134 at 170.783 kb on - strand, within H281DRAFT_03134 at 170.938 kb on + strand, within H281DRAFT_03134 at 171.169 kb on + strand, within H281DRAFT_03134 at 171.170 kb on - strand at 171.170 kb on - strand, within H281DRAFT_03134 at 171.442 kb on - strand at 171.463 kb on - strand at 171.512 kb on + strand at 171.531 kb on - strand at 171.568 kb on + strand at 171.569 kb on - strand at 171.569 kb on - strand at 171.864 kb on + strand, within H281DRAFT_03135 at 171.864 kb on + strand, within H281DRAFT_03135 at 171.865 kb on - strand, within H281DRAFT_03135 at 171.865 kb on - strand, within H281DRAFT_03135 at 171.865 kb on - strand, within H281DRAFT_03135 at 172.124 kb on - strand, within H281DRAFT_03135 at 172.127 kb on - strand, within H281DRAFT_03135
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 169,001 - -0.3 169,001 - -0.2 169,002 + -0.8 169,002 + -0.8 169,002 + +0.8 169,003 - -2.9 169,006 + +1.0 169,006 + -0.8 169,064 + -0.5 169,065 - +0.9 169,563 + +0.9 169,564 - -0.8 169,656 - +0.1 169,725 + +0.8 169,787 - -0.2 169,812 + -0.2 169,985 - -1.0 170,027 - +0.3 170,121 + H281DRAFT_03134 0.10 +0.1 170,273 - H281DRAFT_03134 0.21 -2.4 170,326 - H281DRAFT_03134 0.25 -0.0 170,389 - H281DRAFT_03134 0.29 -0.4 170,435 - H281DRAFT_03134 0.33 +0.5 170,435 - H281DRAFT_03134 0.33 -0.3 170,476 + H281DRAFT_03134 0.36 +0.2 170,476 + H281DRAFT_03134 0.36 -0.4 170,522 + H281DRAFT_03134 0.39 +0.2 170,528 + H281DRAFT_03134 0.39 -0.1 170,628 - H281DRAFT_03134 0.46 -0.5 170,644 + H281DRAFT_03134 0.47 -0.8 170,645 - H281DRAFT_03134 0.48 -0.1 170,734 + H281DRAFT_03134 0.54 +0.1 170,734 + H281DRAFT_03134 0.54 +0.6 170,734 + H281DRAFT_03134 0.54 -2.8 170,735 - H281DRAFT_03134 0.54 -0.6 170,735 - H281DRAFT_03134 0.54 -0.8 170,735 - H281DRAFT_03134 0.54 -1.4 170,735 - H281DRAFT_03134 0.54 -0.0 170,783 - H281DRAFT_03134 0.57 -1.2 170,938 + H281DRAFT_03134 0.68 +1.1 171,169 + H281DRAFT_03134 0.85 +0.4 171,170 - -0.2 171,170 - H281DRAFT_03134 0.85 +1.2 171,442 - -0.1 171,463 - -0.2 171,512 + +0.2 171,531 - +0.4 171,568 + -0.1 171,569 - -0.5 171,569 - +0.5 171,864 + H281DRAFT_03135 0.36 +0.8 171,864 + H281DRAFT_03135 0.36 +1.1 171,865 - H281DRAFT_03135 0.36 -0.7 171,865 - H281DRAFT_03135 0.36 +0.5 171,865 - H281DRAFT_03135 0.36 -0.2 172,124 - H281DRAFT_03135 0.63 +0.6 172,127 - H281DRAFT_03135 0.63 +0.1
Or see this region's nucleotide sequence