Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02889 and H281DRAFT_02890 are separated by 163 nucleotides H281DRAFT_02890 and H281DRAFT_02891 are separated by 123 nucleotides H281DRAFT_02891 and H281DRAFT_02892 are separated by 216 nucleotides
H281DRAFT_02889: H281DRAFT_02889 - alkyl hydroperoxide reductase subunit F, at 490,119 to 491,711
_02889
H281DRAFT_02890: H281DRAFT_02890 - peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 491,875 to 492,438
_02890
H281DRAFT_02891: H281DRAFT_02891 - transcriptional regulator, propionate catabolism operon regulatory protein, at 492,562 to 494,562
_02891
H281DRAFT_02892: H281DRAFT_02892 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 494,779 to 495,660
_02892
Position (kb) 492
493
494
495 Strain fitness (log2 ratio) -2
-1
0
1 at 491.877 kb on - strand at 491.970 kb on - strand, within H281DRAFT_02890 at 492.234 kb on - strand, within H281DRAFT_02890 at 492.234 kb on - strand, within H281DRAFT_02890 at 492.424 kb on - strand at 492.440 kb on + strand at 492.601 kb on - strand at 492.732 kb on + strand at 492.733 kb on - strand at 492.912 kb on - strand, within H281DRAFT_02891 at 492.974 kb on + strand, within H281DRAFT_02891 at 492.995 kb on - strand, within H281DRAFT_02891 at 493.480 kb on + strand, within H281DRAFT_02891 at 494.016 kb on - strand, within H281DRAFT_02891 at 494.330 kb on + strand, within H281DRAFT_02891 at 494.330 kb on + strand, within H281DRAFT_02891 at 494.331 kb on - strand, within H281DRAFT_02891 at 494.331 kb on - strand, within H281DRAFT_02891 at 494.414 kb on + strand at 494.414 kb on + strand at 494.496 kb on + strand at 494.496 kb on + strand at 494.496 kb on + strand at 494.497 kb on - strand at 494.497 kb on - strand at 494.501 kb on - strand at 494.501 kb on - strand at 494.501 kb on - strand at 494.501 kb on - strand at 494.908 kb on + strand, within H281DRAFT_02892 at 494.908 kb on + strand, within H281DRAFT_02892 at 495.068 kb on + strand, within H281DRAFT_02892 at 495.069 kb on - strand, within H281DRAFT_02892
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 491,877 - -0.6 491,970 - H281DRAFT_02890 0.17 -0.2 492,234 - H281DRAFT_02890 0.64 -1.9 492,234 - H281DRAFT_02890 0.64 -1.8 492,424 - -0.4 492,440 + +0.6 492,601 - +0.3 492,732 + -1.2 492,733 - -1.7 492,912 - H281DRAFT_02891 0.17 +0.0 492,974 + H281DRAFT_02891 0.21 -0.6 492,995 - H281DRAFT_02891 0.22 +1.0 493,480 + H281DRAFT_02891 0.46 -0.7 494,016 - H281DRAFT_02891 0.73 -1.6 494,330 + H281DRAFT_02891 0.88 -0.5 494,330 + H281DRAFT_02891 0.88 -0.8 494,331 - H281DRAFT_02891 0.88 +1.0 494,331 - H281DRAFT_02891 0.88 +0.0 494,414 + -0.2 494,414 + -0.9 494,496 + +0.2 494,496 + +0.6 494,496 + +0.2 494,497 - -0.2 494,497 - +0.3 494,501 - -0.0 494,501 - +0.7 494,501 - -0.4 494,501 - +0.1 494,908 + H281DRAFT_02892 0.15 +0.4 494,908 + H281DRAFT_02892 0.15 -0.2 495,068 + H281DRAFT_02892 0.33 +0.6 495,069 - H281DRAFT_02892 0.33 -0.6
Or see this region's nucleotide sequence