Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02864 and H281DRAFT_02865 are separated by 0 nucleotides H281DRAFT_02865 and H281DRAFT_02866 overlap by 4 nucleotides H281DRAFT_02866 and H281DRAFT_02867 are separated by 14 nucleotides
H281DRAFT_02864: H281DRAFT_02864 - precorrin-8X methylmutase, at 457,708 to 458,334
_02864
H281DRAFT_02865: H281DRAFT_02865 - precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase, at 458,335 to 459,075
_02865
H281DRAFT_02866: H281DRAFT_02866 - precorrin-3 methyltransferase (EC 2.1.1.131), at 459,072 to 460,826
_02866
H281DRAFT_02867: H281DRAFT_02867 - DNA repair exonuclease SbcCD ATPase subunit, at 460,841 to 463,465
_02867
Position (kb) 459
460
461 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 458.254 kb on + strand, within H281DRAFT_02864 at 458.254 kb on + strand, within H281DRAFT_02864 at 458.254 kb on + strand, within H281DRAFT_02864 at 458.364 kb on - strand at 458.364 kb on - strand at 458.364 kb on - strand at 458.364 kb on - strand at 458.366 kb on - strand at 458.409 kb on - strand, within H281DRAFT_02865 at 458.450 kb on - strand, within H281DRAFT_02865 at 458.537 kb on - strand, within H281DRAFT_02865 at 458.575 kb on + strand, within H281DRAFT_02865 at 458.575 kb on + strand, within H281DRAFT_02865 at 458.618 kb on + strand, within H281DRAFT_02865 at 458.618 kb on + strand, within H281DRAFT_02865 at 458.693 kb on - strand, within H281DRAFT_02865 at 458.693 kb on - strand, within H281DRAFT_02865 at 458.698 kb on + strand, within H281DRAFT_02865 at 458.698 kb on + strand, within H281DRAFT_02865 at 458.699 kb on - strand, within H281DRAFT_02865 at 458.699 kb on - strand, within H281DRAFT_02865 at 458.699 kb on - strand, within H281DRAFT_02865 at 458.725 kb on + strand, within H281DRAFT_02865 at 459.032 kb on - strand at 459.142 kb on - strand at 459.228 kb on + strand at 459.229 kb on - strand at 459.518 kb on + strand, within H281DRAFT_02866 at 459.967 kb on + strand, within H281DRAFT_02866 at 459.968 kb on - strand, within H281DRAFT_02866 at 460.037 kb on - strand, within H281DRAFT_02866 at 460.185 kb on + strand, within H281DRAFT_02866 at 460.185 kb on + strand, within H281DRAFT_02866 at 460.185 kb on + strand, within H281DRAFT_02866 at 460.185 kb on + strand, within H281DRAFT_02866 at 460.186 kb on - strand, within H281DRAFT_02866 at 460.186 kb on - strand, within H281DRAFT_02866 at 460.570 kb on - strand, within H281DRAFT_02866 at 460.570 kb on - strand, within H281DRAFT_02866 at 460.737 kb on - strand at 460.803 kb on + strand at 460.824 kb on + strand at 460.824 kb on + strand at 460.838 kb on + strand at 460.839 kb on - strand at 460.839 kb on - strand at 460.843 kb on - strand at 460.859 kb on - strand at 460.990 kb on + strand at 461.715 kb on - strand, within H281DRAFT_02867
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 458,254 + H281DRAFT_02864 0.87 -3.7 458,254 + H281DRAFT_02864 0.87 -3.6 458,254 + H281DRAFT_02864 0.87 -3.5 458,364 - -1.6 458,364 - -2.5 458,364 - -2.6 458,364 - -0.1 458,366 - -3.0 458,409 - H281DRAFT_02865 0.10 -1.4 458,450 - H281DRAFT_02865 0.16 -1.2 458,537 - H281DRAFT_02865 0.27 -1.2 458,575 + H281DRAFT_02865 0.32 -1.5 458,575 + H281DRAFT_02865 0.32 -2.2 458,618 + H281DRAFT_02865 0.38 -1.8 458,618 + H281DRAFT_02865 0.38 -3.1 458,693 - H281DRAFT_02865 0.48 -1.1 458,693 - H281DRAFT_02865 0.48 +0.6 458,698 + H281DRAFT_02865 0.49 +0.6 458,698 + H281DRAFT_02865 0.49 +0.6 458,699 - H281DRAFT_02865 0.49 -1.6 458,699 - H281DRAFT_02865 0.49 -2.7 458,699 - H281DRAFT_02865 0.49 -1.5 458,725 + H281DRAFT_02865 0.53 -1.7 459,032 - -2.6 459,142 - -4.9 459,228 + -1.7 459,229 - -1.2 459,518 + H281DRAFT_02866 0.25 -1.4 459,967 + H281DRAFT_02866 0.51 -1.1 459,968 - H281DRAFT_02866 0.51 -0.6 460,037 - H281DRAFT_02866 0.55 -2.1 460,185 + H281DRAFT_02866 0.63 -1.4 460,185 + H281DRAFT_02866 0.63 -2.8 460,185 + H281DRAFT_02866 0.63 -2.5 460,185 + H281DRAFT_02866 0.63 -1.2 460,186 - H281DRAFT_02866 0.63 -1.1 460,186 - H281DRAFT_02866 0.63 -0.9 460,570 - H281DRAFT_02866 0.85 -2.2 460,570 - H281DRAFT_02866 0.85 -1.0 460,737 - +0.6 460,803 + -3.0 460,824 + -0.2 460,824 + -0.4 460,838 + -0.4 460,839 - -0.2 460,839 - -0.4 460,843 - +1.8 460,859 - -0.5 460,990 + -1.4 461,715 - H281DRAFT_02867 0.33 +1.0
Or see this region's nucleotide sequence