Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02791 and H281DRAFT_02794 are separated by 317 nucleotides H281DRAFT_02794 and H281DRAFT_02795 are separated by 64 nucleotides H281DRAFT_02795 and H281DRAFT_02796 are separated by 21 nucleotides
H281DRAFT_02791: H281DRAFT_02791 - apolipoprotein D and lipocalin family protein, at 380,432 to 381,004
_02791
H281DRAFT_02794: H281DRAFT_02794 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 381,322 to 382,533
_02794
H281DRAFT_02795: H281DRAFT_02795 - Predicted periplasmic or secreted lipoprotein, at 382,598 to 382,876
_02795
H281DRAFT_02796: H281DRAFT_02796 - acetate kinase, at 382,898 to 384,055
_02796
Position (kb) 381
382
383 Strain fitness (log2 ratio) -2
-1
0
1
2 at 380.471 kb on - strand at 380.585 kb on + strand, within H281DRAFT_02791 at 380.660 kb on + strand, within H281DRAFT_02791 at 380.999 kb on - strand at 380.999 kb on - strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.244 kb on + strand at 381.306 kb on + strand at 381.307 kb on - strand at 381.307 kb on - strand at 381.424 kb on + strand at 381.492 kb on + strand, within H281DRAFT_02794 at 381.740 kb on - strand, within H281DRAFT_02794 at 381.740 kb on - strand, within H281DRAFT_02794 at 382.133 kb on - strand, within H281DRAFT_02794 at 382.329 kb on - strand, within H281DRAFT_02794 at 382.456 kb on + strand at 382.456 kb on + strand at 382.456 kb on + strand at 382.457 kb on - strand at 382.562 kb on + strand at 382.563 kb on - strand at 382.845 kb on + strand, within H281DRAFT_02795 at 383.301 kb on + strand, within H281DRAFT_02796 at 383.301 kb on + strand, within H281DRAFT_02796 at 383.303 kb on + strand, within H281DRAFT_02796 at 383.304 kb on - strand, within H281DRAFT_02796 at 383.304 kb on - strand, within H281DRAFT_02796 at 383.304 kb on - strand, within H281DRAFT_02796 at 383.380 kb on + strand, within H281DRAFT_02796 at 383.491 kb on - strand, within H281DRAFT_02796
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 380,471 - -0.7 380,585 + H281DRAFT_02791 0.27 -1.2 380,660 + H281DRAFT_02791 0.40 -0.8 380,999 - -1.0 380,999 - -0.3 381,206 + -1.8 381,206 + -0.1 381,206 + -1.0 381,206 + +1.0 381,206 + -0.1 381,244 + +1.7 381,306 + +0.1 381,307 - +0.1 381,307 - +1.0 381,424 + +2.1 381,492 + H281DRAFT_02794 0.14 -1.0 381,740 - H281DRAFT_02794 0.34 -0.4 381,740 - H281DRAFT_02794 0.34 +1.5 382,133 - H281DRAFT_02794 0.67 -0.6 382,329 - H281DRAFT_02794 0.83 +0.1 382,456 + -1.0 382,456 + +0.2 382,456 + +1.3 382,457 - +0.3 382,562 + -0.9 382,563 - -1.4 382,845 + H281DRAFT_02795 0.89 -0.0 383,301 + H281DRAFT_02796 0.35 +1.8 383,301 + H281DRAFT_02796 0.35 -1.2 383,303 + H281DRAFT_02796 0.35 -0.5 383,304 - H281DRAFT_02796 0.35 -0.2 383,304 - H281DRAFT_02796 0.35 +0.1 383,304 - H281DRAFT_02796 0.35 +0.1 383,380 + H281DRAFT_02796 0.42 +0.7 383,491 - H281DRAFT_02796 0.51 -0.7
Or see this region's nucleotide sequence