Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02785 and H281DRAFT_02786 are separated by 262 nucleotides H281DRAFT_02786 and H281DRAFT_02787 overlap by 41 nucleotides H281DRAFT_02787 and H281DRAFT_02788 are separated by 370 nucleotides
H281DRAFT_02785: H281DRAFT_02785 - DNA polymerase, at 375,061 to 375,723
_02785
H281DRAFT_02786: H281DRAFT_02786 - hypothetical protein, at 375,986 to 376,156
_02786
H281DRAFT_02787: H281DRAFT_02787 - Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family, at 376,116 to 377,270
_02787
H281DRAFT_02788: H281DRAFT_02788 - Acyl-CoA dehydrogenase, at 377,641 to 378,906
_02788
Position (kb) 376
377
378 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 375.173 kb on + strand, within H281DRAFT_02785 at 375.174 kb on - strand, within H281DRAFT_02785 at 375.744 kb on + strand at 375.744 kb on + strand at 375.745 kb on - strand at 375.931 kb on - strand at 375.997 kb on + strand at 375.998 kb on - strand at 376.001 kb on + strand at 376.001 kb on + strand at 376.002 kb on - strand at 376.155 kb on - strand at 376.288 kb on + strand, within H281DRAFT_02787 at 376.396 kb on + strand, within H281DRAFT_02787 at 376.604 kb on + strand, within H281DRAFT_02787 at 376.605 kb on - strand, within H281DRAFT_02787 at 377.020 kb on - strand, within H281DRAFT_02787 at 377.250 kb on - strand at 377.369 kb on + strand at 377.596 kb on + strand at 377.630 kb on - strand at 377.861 kb on - strand, within H281DRAFT_02788 at 378.039 kb on - strand, within H281DRAFT_02788 at 378.136 kb on + strand, within H281DRAFT_02788 at 378.152 kb on + strand, within H281DRAFT_02788
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 375,173 + H281DRAFT_02785 0.17 -0.3 375,174 - H281DRAFT_02785 0.17 +0.4 375,744 + -1.0 375,744 + +0.7 375,745 - -0.6 375,931 - +0.9 375,997 + +0.9 375,998 - +0.3 376,001 + -0.4 376,001 + -0.4 376,002 - -0.4 376,155 - -0.1 376,288 + H281DRAFT_02787 0.15 +1.3 376,396 + H281DRAFT_02787 0.24 +1.2 376,604 + H281DRAFT_02787 0.42 -0.9 376,605 - H281DRAFT_02787 0.42 -3.0 377,020 - H281DRAFT_02787 0.78 -0.4 377,250 - +0.6 377,369 + -1.5 377,596 + -0.1 377,630 - +0.1 377,861 - H281DRAFT_02788 0.17 -0.1 378,039 - H281DRAFT_02788 0.31 +0.3 378,136 + H281DRAFT_02788 0.39 -0.6 378,152 + H281DRAFT_02788 0.40 -0.7
Or see this region's nucleotide sequence