Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02781 and H281DRAFT_02782 are separated by 34 nucleotides H281DRAFT_02782 and H281DRAFT_02783 overlap by 1 nucleotides H281DRAFT_02783 and H281DRAFT_02784 are separated by 166 nucleotides H281DRAFT_02784 and H281DRAFT_02785 are separated by 52 nucleotides H281DRAFT_02785 and H281DRAFT_02786 are separated by 262 nucleotides
H281DRAFT_02781: H281DRAFT_02781 - Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains, at 371,702 to 373,093
_02781
H281DRAFT_02782: H281DRAFT_02782 - hypothetical protein, at 373,128 to 373,613
_02782
H281DRAFT_02783: H281DRAFT_02783 - hypothetical protein, at 373,613 to 373,921
_02783
H281DRAFT_02784: H281DRAFT_02784 - Uncharacterized conserved protein YecE, DUF72 family, at 374,088 to 375,008
_02784
H281DRAFT_02785: H281DRAFT_02785 - DNA polymerase, at 375,061 to 375,723
_02785
H281DRAFT_02786: H281DRAFT_02786 - hypothetical protein, at 375,986 to 376,156
_02786
Position (kb) 374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 373.988 kb on + strand at 373.989 kb on - strand at 373.989 kb on - strand at 373.994 kb on + strand at 373.995 kb on - strand at 373.995 kb on - strand at 374.137 kb on - strand at 374.138 kb on + strand at 374.161 kb on - strand at 374.161 kb on - strand at 374.731 kb on - strand, within H281DRAFT_02784 at 374.899 kb on - strand, within H281DRAFT_02784 at 374.904 kb on + strand, within H281DRAFT_02784 at 375.173 kb on + strand, within H281DRAFT_02785 at 375.174 kb on - strand, within H281DRAFT_02785 at 375.744 kb on + strand at 375.744 kb on + strand at 375.745 kb on - strand at 375.931 kb on - strand at 375.997 kb on + strand at 375.998 kb on - strand at 376.001 kb on + strand at 376.001 kb on + strand at 376.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 373,988 + +1.6 373,989 - -0.5 373,989 - +1.6 373,994 + -0.4 373,995 - -0.8 373,995 - +1.6 374,137 - -0.5 374,138 + +0.8 374,161 - +0.0 374,161 - -0.2 374,731 - H281DRAFT_02784 0.70 -0.7 374,899 - H281DRAFT_02784 0.88 -2.9 374,904 + H281DRAFT_02784 0.89 -0.4 375,173 + H281DRAFT_02785 0.17 -0.3 375,174 - H281DRAFT_02785 0.17 +0.4 375,744 + -1.0 375,744 + +0.7 375,745 - -0.6 375,931 - +0.9 375,997 + +0.9 375,998 - +0.3 376,001 + -0.4 376,001 + -0.4 376,002 - -0.4
Or see this region's nucleotide sequence