Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02587 and H281DRAFT_02588 are separated by 355 nucleotides H281DRAFT_02588 and H281DRAFT_02589 are separated by 232 nucleotides H281DRAFT_02589 and H281DRAFT_02590 overlap by 41 nucleotides
H281DRAFT_02587: H281DRAFT_02587 - Phospholipase/lecithinase/hemolysin, at 161,419 to 162,438
_02587
H281DRAFT_02588: H281DRAFT_02588 - PRC-barrel domain-containing protein, at 162,794 to 163,216
_02588
H281DRAFT_02589: H281DRAFT_02589 - hypothetical protein, at 163,449 to 164,057
_02589
H281DRAFT_02590: H281DRAFT_02590 - Quinol monooxygenase YgiN, at 164,017 to 164,319
_02590
Position (kb) 162
163
164 Strain fitness (log2 ratio) -1
0
1
2 at 161.863 kb on + strand, within H281DRAFT_02587 at 161.863 kb on + strand, within H281DRAFT_02587 at 162.264 kb on - strand, within H281DRAFT_02587 at 162.379 kb on + strand at 162.415 kb on + strand at 162.453 kb on - strand at 162.513 kb on - strand at 162.610 kb on + strand at 162.620 kb on + strand at 162.621 kb on - strand at 162.873 kb on - strand, within H281DRAFT_02588 at 162.873 kb on - strand, within H281DRAFT_02588 at 163.020 kb on + strand, within H281DRAFT_02588 at 163.030 kb on + strand, within H281DRAFT_02588 at 163.031 kb on - strand, within H281DRAFT_02588 at 163.336 kb on - strand at 163.920 kb on + strand, within H281DRAFT_02589 at 164.041 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 161,863 + H281DRAFT_02587 0.44 +0.4 161,863 + H281DRAFT_02587 0.44 +0.7 162,264 - H281DRAFT_02587 0.83 -0.3 162,379 + +0.3 162,415 + +1.5 162,453 - +0.9 162,513 - -0.2 162,610 + +1.9 162,620 + +0.5 162,621 - -0.9 162,873 - H281DRAFT_02588 0.19 +0.7 162,873 - H281DRAFT_02588 0.19 -1.2 163,020 + H281DRAFT_02588 0.53 -0.7 163,030 + H281DRAFT_02588 0.56 -0.3 163,031 - H281DRAFT_02588 0.56 -0.3 163,336 - +0.4 163,920 + H281DRAFT_02589 0.77 +0.4 164,041 + -0.2
Or see this region's nucleotide sequence