Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02513 and H281DRAFT_02514 overlap by 4 nucleotides H281DRAFT_02514 and H281DRAFT_02515 are separated by 30 nucleotides H281DRAFT_02515 and H281DRAFT_02516 are separated by 63 nucleotides
H281DRAFT_02513: H281DRAFT_02513 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 89,268 to 90,509
_02513
H281DRAFT_02514: H281DRAFT_02514 - enoyl-CoA hydratase, at 90,506 to 91,282
_02514
H281DRAFT_02515: H281DRAFT_02515 - short chain enoyl-CoA hydratase (EC 4.2.1.17)/Enoyl-CoA hydratase (EC 4.2.1.17), at 91,313 to 92,134
_02515
H281DRAFT_02516: H281DRAFT_02516 - Nitrate/nitrite transporter NarK, at 92,198 to 93,571
_02516
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1
2 at 90.752 kb on + strand, within H281DRAFT_02514 at 90.753 kb on - strand, within H281DRAFT_02514 at 90.753 kb on - strand, within H281DRAFT_02514 at 90.753 kb on - strand, within H281DRAFT_02514 at 92.056 kb on - strand at 92.172 kb on + strand at 92.283 kb on - strand at 92.301 kb on - strand at 92.301 kb on - strand at 92.397 kb on - strand, within H281DRAFT_02516 at 92.400 kb on + strand, within H281DRAFT_02516 at 92.401 kb on - strand, within H281DRAFT_02516 at 92.401 kb on - strand, within H281DRAFT_02516 at 92.621 kb on + strand, within H281DRAFT_02516 at 92.979 kb on - strand, within H281DRAFT_02516 at 92.980 kb on + strand, within H281DRAFT_02516 at 92.993 kb on + strand, within H281DRAFT_02516 at 92.993 kb on + strand, within H281DRAFT_02516 at 92.993 kb on + strand, within H281DRAFT_02516 at 92.994 kb on - strand, within H281DRAFT_02516 at 92.995 kb on + strand, within H281DRAFT_02516 at 92.995 kb on + strand, within H281DRAFT_02516 at 92.996 kb on - strand, within H281DRAFT_02516 at 92.996 kb on - strand, within H281DRAFT_02516 at 93.002 kb on + strand, within H281DRAFT_02516 at 93.065 kb on - strand, within H281DRAFT_02516
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 90,752 + H281DRAFT_02514 0.32 -0.7 90,753 - H281DRAFT_02514 0.32 +0.1 90,753 - H281DRAFT_02514 0.32 -1.1 90,753 - H281DRAFT_02514 0.32 -0.3 92,056 - -0.4 92,172 + +1.5 92,283 - +0.7 92,301 - -0.5 92,301 - -0.5 92,397 - H281DRAFT_02516 0.14 +0.4 92,400 + H281DRAFT_02516 0.15 -0.2 92,401 - H281DRAFT_02516 0.15 -0.9 92,401 - H281DRAFT_02516 0.15 -0.6 92,621 + H281DRAFT_02516 0.31 +0.4 92,979 - H281DRAFT_02516 0.57 +0.1 92,980 + H281DRAFT_02516 0.57 -1.8 92,993 + H281DRAFT_02516 0.58 -0.1 92,993 + H281DRAFT_02516 0.58 +0.3 92,993 + H281DRAFT_02516 0.58 +0.0 92,994 - H281DRAFT_02516 0.58 -0.5 92,995 + H281DRAFT_02516 0.58 +1.5 92,995 + H281DRAFT_02516 0.58 -0.8 92,996 - H281DRAFT_02516 0.58 -0.9 92,996 - H281DRAFT_02516 0.58 -0.8 93,002 + H281DRAFT_02516 0.59 -0.5 93,065 - H281DRAFT_02516 0.63 +2.4
Or see this region's nucleotide sequence