Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02481 and H281DRAFT_02482 are separated by 276 nucleotides H281DRAFT_02482 and H281DRAFT_02483 are separated by 276 nucleotides
H281DRAFT_02481: H281DRAFT_02481 - glycine betaine/proline transport system substrate-binding protein, at 53,607 to 54,560
_02481
H281DRAFT_02482: H281DRAFT_02482 - outer membrane protein OmpU, at 54,837 to 55,985
_02482
H281DRAFT_02483: H281DRAFT_02483 - transcriptional regulator, LysR family, at 56,262 to 57,179
_02483
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.048 kb on + strand, within H281DRAFT_02481 at 54.328 kb on - strand, within H281DRAFT_02481 at 54.400 kb on + strand, within H281DRAFT_02481 at 54.400 kb on + strand, within H281DRAFT_02481 at 54.963 kb on + strand, within H281DRAFT_02482 at 54.964 kb on - strand, within H281DRAFT_02482 at 55.017 kb on + strand, within H281DRAFT_02482 at 55.152 kb on + strand, within H281DRAFT_02482 at 55.152 kb on + strand, within H281DRAFT_02482 at 55.237 kb on + strand, within H281DRAFT_02482 at 55.320 kb on + strand, within H281DRAFT_02482 at 55.459 kb on - strand, within H281DRAFT_02482 at 55.716 kb on - strand, within H281DRAFT_02482 at 55.716 kb on - strand, within H281DRAFT_02482 at 55.716 kb on - strand, within H281DRAFT_02482 at 55.726 kb on - strand, within H281DRAFT_02482 at 55.726 kb on - strand, within H281DRAFT_02482 at 55.726 kb on - strand, within H281DRAFT_02482 at 55.744 kb on - strand, within H281DRAFT_02482 at 55.769 kb on - strand, within H281DRAFT_02482 at 55.837 kb on - strand, within H281DRAFT_02482 at 55.865 kb on + strand, within H281DRAFT_02482 at 56.029 kb on - strand at 56.151 kb on + strand at 56.151 kb on + strand at 56.152 kb on - strand at 56.231 kb on - strand at 56.231 kb on - strand at 56.231 kb on - strand at 56.305 kb on + strand at 56.305 kb on + strand at 56.306 kb on - strand at 56.369 kb on - strand, within H281DRAFT_02483 at 56.373 kb on + strand, within H281DRAFT_02483 at 56.374 kb on - strand, within H281DRAFT_02483 at 56.907 kb on + strand, within H281DRAFT_02483 at 56.907 kb on + strand, within H281DRAFT_02483 at 56.908 kb on - strand, within H281DRAFT_02483 at 56.929 kb on + strand, within H281DRAFT_02483
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 54,048 + H281DRAFT_02481 0.46 +0.5 54,328 - H281DRAFT_02481 0.76 +0.1 54,400 + H281DRAFT_02481 0.83 -0.3 54,400 + H281DRAFT_02481 0.83 -0.7 54,963 + H281DRAFT_02482 0.11 +0.6 54,964 - H281DRAFT_02482 0.11 -2.6 55,017 + H281DRAFT_02482 0.16 +0.4 55,152 + H281DRAFT_02482 0.27 +1.8 55,152 + H281DRAFT_02482 0.27 +0.7 55,237 + H281DRAFT_02482 0.35 +0.3 55,320 + H281DRAFT_02482 0.42 +1.1 55,459 - H281DRAFT_02482 0.54 +1.0 55,716 - H281DRAFT_02482 0.77 +0.7 55,716 - H281DRAFT_02482 0.77 +0.2 55,716 - H281DRAFT_02482 0.77 +0.6 55,726 - H281DRAFT_02482 0.77 +0.3 55,726 - H281DRAFT_02482 0.77 -0.3 55,726 - H281DRAFT_02482 0.77 +0.2 55,744 - H281DRAFT_02482 0.79 +0.2 55,769 - H281DRAFT_02482 0.81 +0.1 55,837 - H281DRAFT_02482 0.87 -0.8 55,865 + H281DRAFT_02482 0.89 -0.1 56,029 - +0.2 56,151 + +0.3 56,151 + +0.5 56,152 - +1.2 56,231 - +2.3 56,231 - -0.5 56,231 - +0.5 56,305 + -1.0 56,305 + -0.7 56,306 - +0.1 56,369 - H281DRAFT_02483 0.12 -1.0 56,373 + H281DRAFT_02483 0.12 -0.9 56,374 - H281DRAFT_02483 0.12 +0.5 56,907 + H281DRAFT_02483 0.70 -1.0 56,907 + H281DRAFT_02483 0.70 -0.3 56,908 - H281DRAFT_02483 0.70 +0.8 56,929 + H281DRAFT_02483 0.73 -0.1
Or see this region's nucleotide sequence