Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02326 and H281DRAFT_02327 are separated by 72 nucleotides H281DRAFT_02327 and H281DRAFT_02328 are separated by 501 nucleotides H281DRAFT_02328 and H281DRAFT_02329 are separated by 272 nucleotides
H281DRAFT_02326: H281DRAFT_02326 - histidine triad (HIT) family protein, at 482,763 to 483,188
_02326
H281DRAFT_02327: H281DRAFT_02327 - hypothetical protein, at 483,261 to 483,440
_02327
H281DRAFT_02328: H281DRAFT_02328 - hypothetical protein, at 483,942 to 484,280
_02328
H281DRAFT_02329: H281DRAFT_02329 - dihydroxyacid dehydratase, at 484,553 to 486,286
_02329
Position (kb) 483
484
485 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 483.103 kb on + strand, within H281DRAFT_02326 at 483.104 kb on - strand, within H281DRAFT_02326 at 483.229 kb on + strand at 483.229 kb on + strand at 483.229 kb on + strand at 483.263 kb on - strand at 483.472 kb on + strand at 483.473 kb on - strand at 483.477 kb on + strand at 483.477 kb on + strand at 483.478 kb on - strand at 483.478 kb on - strand at 483.478 kb on - strand at 483.491 kb on + strand at 483.492 kb on - strand at 483.569 kb on + strand at 483.647 kb on - strand at 483.650 kb on - strand at 483.650 kb on - strand at 483.681 kb on + strand at 483.738 kb on + strand at 483.738 kb on + strand at 483.747 kb on + strand at 483.747 kb on + strand at 483.748 kb on - strand at 483.786 kb on + strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.864 kb on - strand at 483.896 kb on - strand at 483.896 kb on - strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.900 kb on - strand at 483.900 kb on - strand at 483.903 kb on + strand at 483.903 kb on + strand at 483.903 kb on + strand at 483.904 kb on - strand at 483.904 kb on - strand at 483.904 kb on - strand at 483.904 kb on - strand at 483.941 kb on + strand at 483.941 kb on + strand at 483.942 kb on - strand at 483.942 kb on - strand at 484.057 kb on - strand, within H281DRAFT_02328 at 484.233 kb on - strand, within H281DRAFT_02328 at 484.284 kb on + strand at 484.284 kb on + strand at 484.285 kb on - strand at 484.285 kb on - strand at 484.286 kb on + strand at 484.286 kb on + strand at 484.286 kb on + strand at 484.287 kb on - strand at 484.287 kb on - strand at 484.287 kb on - strand at 484.287 kb on - strand at 484.287 kb on - strand at 484.384 kb on + strand at 484.384 kb on + strand at 484.528 kb on + strand at 484.528 kb on + strand at 484.529 kb on - strand at 484.644 kb on + strand at 484.644 kb on + strand at 484.654 kb on - strand at 484.870 kb on + strand, within H281DRAFT_02329 at 484.870 kb on + strand, within H281DRAFT_02329 at 484.886 kb on - strand, within H281DRAFT_02329
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 483,103 + H281DRAFT_02326 0.80 +0.3 483,104 - H281DRAFT_02326 0.80 -0.7 483,229 + -1.4 483,229 + +0.0 483,229 + -0.7 483,263 - +0.4 483,472 + -1.1 483,473 - +0.8 483,477 + -0.9 483,477 + +1.5 483,478 - -0.6 483,478 - -0.2 483,478 - +0.2 483,491 + -0.4 483,492 - -0.1 483,569 + +1.7 483,647 - -0.1 483,650 - -0.9 483,650 - -0.5 483,681 + -0.5 483,738 + -0.1 483,738 + -2.9 483,747 + +0.3 483,747 + +0.1 483,748 - +0.8 483,786 + -1.3 483,787 - -0.5 483,787 - -0.1 483,787 - +1.1 483,787 - -0.1 483,787 - -0.3 483,864 - +0.8 483,896 - -0.9 483,896 - -0.4 483,899 + +1.2 483,899 + -0.2 483,899 + +0.5 483,899 + -1.8 483,899 + +0.5 483,899 + -0.1 483,899 + -0.2 483,899 + -1.2 483,900 - -1.0 483,900 - +0.2 483,903 + -1.9 483,903 + -0.4 483,903 + -0.0 483,904 - -0.2 483,904 - -0.4 483,904 - -0.5 483,904 - +0.4 483,941 + -0.0 483,941 + -0.3 483,942 - -0.5 483,942 - +0.6 484,057 - H281DRAFT_02328 0.34 -1.3 484,233 - H281DRAFT_02328 0.86 -4.2 484,284 + -1.7 484,284 + +0.5 484,285 - +1.1 484,285 - +1.1 484,286 + +0.4 484,286 + -0.3 484,286 + -1.5 484,287 - -0.7 484,287 - -0.9 484,287 - +0.1 484,287 - +0.1 484,287 - -0.5 484,384 + +0.3 484,384 + +0.1 484,528 + -2.6 484,528 + -0.0 484,529 - -0.2 484,644 + -0.3 484,644 + -0.1 484,654 - -0.8 484,870 + H281DRAFT_02329 0.18 +1.6 484,870 + H281DRAFT_02329 0.18 +0.4 484,886 - H281DRAFT_02329 0.19 -1.8
Or see this region's nucleotide sequence