Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01512 and H281DRAFT_01513 are separated by 61 nucleotides H281DRAFT_01513 and H281DRAFT_01514 are separated by 97 nucleotides H281DRAFT_01514 and H281DRAFT_01515 are separated by 80 nucleotides
H281DRAFT_01512: H281DRAFT_01512 - transcriptional regulator, IclR family, at 382,419 to 383,243
_01512
H281DRAFT_01513: H281DRAFT_01513 - hippurate hydrolase, at 383,305 to 384,495
_01513
H281DRAFT_01514: H281DRAFT_01514 - ribose 1,5-bisphosphokinase, at 384,593 to 385,144
_01514
H281DRAFT_01515: H281DRAFT_01515 - transcriptional regulator, GntR family, at 385,225 to 386,058
_01515
Position (kb) 383
384
385 Strain fitness (log2 ratio) -1
0
1
2 at 382.319 kb on + strand at 382.319 kb on + strand at 382.566 kb on - strand, within H281DRAFT_01512 at 382.795 kb on + strand, within H281DRAFT_01512 at 383.133 kb on - strand, within H281DRAFT_01512 at 383.381 kb on + strand at 383.434 kb on + strand, within H281DRAFT_01513 at 383.434 kb on + strand, within H281DRAFT_01513 at 383.598 kb on + strand, within H281DRAFT_01513 at 383.625 kb on - strand, within H281DRAFT_01513 at 383.902 kb on + strand, within H281DRAFT_01513 at 384.287 kb on - strand, within H281DRAFT_01513 at 384.392 kb on + strand at 384.551 kb on - strand at 384.594 kb on + strand at 385.028 kb on - strand, within H281DRAFT_01514 at 385.032 kb on + strand, within H281DRAFT_01514 at 385.126 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 382,319 + -0.1 382,319 + -0.8 382,566 - H281DRAFT_01512 0.18 +0.8 382,795 + H281DRAFT_01512 0.46 +0.1 383,133 - H281DRAFT_01512 0.87 +2.6 383,381 + +0.9 383,434 + H281DRAFT_01513 0.11 -0.4 383,434 + H281DRAFT_01513 0.11 -0.6 383,598 + H281DRAFT_01513 0.25 -0.1 383,625 - H281DRAFT_01513 0.27 +2.0 383,902 + H281DRAFT_01513 0.50 -0.4 384,287 - H281DRAFT_01513 0.82 +0.1 384,392 + -0.4 384,551 - -1.3 384,594 + -0.3 385,028 - H281DRAFT_01514 0.79 -1.7 385,032 + H281DRAFT_01514 0.80 -0.6 385,126 - +1.1
Or see this region's nucleotide sequence