Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01511 and H281DRAFT_01512 are separated by 216 nucleotides H281DRAFT_01512 and H281DRAFT_01513 are separated by 61 nucleotides
H281DRAFT_01511: H281DRAFT_01511 - transcriptional regulator, GntR family, at 381,498 to 382,202
_01511
H281DRAFT_01512: H281DRAFT_01512 - transcriptional regulator, IclR family, at 382,419 to 383,243
_01512
H281DRAFT_01513: H281DRAFT_01513 - hippurate hydrolase, at 383,305 to 384,495
_01513
Position (kb) 382
383
384 Strain fitness (log2 ratio) -2
-1
0
1
2 at 381.422 kb on + strand at 381.688 kb on + strand, within H281DRAFT_01511 at 381.688 kb on + strand, within H281DRAFT_01511 at 381.688 kb on + strand, within H281DRAFT_01511 at 381.689 kb on - strand, within H281DRAFT_01511 at 382.146 kb on - strand at 382.319 kb on + strand at 382.319 kb on + strand at 382.566 kb on - strand, within H281DRAFT_01512 at 382.795 kb on + strand, within H281DRAFT_01512 at 383.133 kb on - strand, within H281DRAFT_01512 at 383.381 kb on + strand at 383.434 kb on + strand, within H281DRAFT_01513 at 383.434 kb on + strand, within H281DRAFT_01513 at 383.598 kb on + strand, within H281DRAFT_01513 at 383.625 kb on - strand, within H281DRAFT_01513 at 383.902 kb on + strand, within H281DRAFT_01513
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 381,422 + +0.6 381,688 + H281DRAFT_01511 0.27 -2.3 381,688 + H281DRAFT_01511 0.27 +0.7 381,688 + H281DRAFT_01511 0.27 -0.7 381,689 - H281DRAFT_01511 0.27 -0.0 382,146 - -1.1 382,319 + -0.1 382,319 + -0.8 382,566 - H281DRAFT_01512 0.18 +0.8 382,795 + H281DRAFT_01512 0.46 +0.1 383,133 - H281DRAFT_01512 0.87 +2.6 383,381 + +0.9 383,434 + H281DRAFT_01513 0.11 -0.4 383,434 + H281DRAFT_01513 0.11 -0.6 383,598 + H281DRAFT_01513 0.25 -0.1 383,625 - H281DRAFT_01513 0.27 +2.0 383,902 + H281DRAFT_01513 0.50 -0.4
Or see this region's nucleotide sequence