Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01256 and H281DRAFT_01257 are separated by 231 nucleotides H281DRAFT_01257 and H281DRAFT_01258 are separated by 47 nucleotides H281DRAFT_01258 and H281DRAFT_01259 are separated by 156 nucleotides
H281DRAFT_01256: H281DRAFT_01256 - hypothetical protein, at 91,109 to 91,486
_01256
H281DRAFT_01257: H281DRAFT_01257 - Catechol 2,3-dioxygenase, at 91,718 to 92,116
_01257
H281DRAFT_01258: H281DRAFT_01258 - transcriptional regulator, LysR family, at 92,164 to 93,117
_01258
H281DRAFT_01259: H281DRAFT_01259 - putative spermidine/putrescine transport system substrate-binding protein, at 93,274 to 94,341
_01259
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1
2 at 91.174 kb on - strand, within H281DRAFT_01256 at 91.225 kb on + strand, within H281DRAFT_01256 at 91.226 kb on - strand, within H281DRAFT_01256 at 91.501 kb on + strand at 91.563 kb on + strand at 91.700 kb on + strand at 91.701 kb on - strand at 91.701 kb on - strand at 91.802 kb on + strand, within H281DRAFT_01257 at 92.115 kb on - strand at 92.737 kb on - strand, within H281DRAFT_01258 at 92.771 kb on - strand, within H281DRAFT_01258 at 93.135 kb on + strand at 93.169 kb on + strand at 93.174 kb on - strand at 93.388 kb on + strand, within H281DRAFT_01259 at 93.388 kb on + strand, within H281DRAFT_01259 at 93.389 kb on - strand, within H281DRAFT_01259 at 93.462 kb on + strand, within H281DRAFT_01259 at 93.574 kb on + strand, within H281DRAFT_01259 at 93.575 kb on - strand, within H281DRAFT_01259 at 93.812 kb on - strand, within H281DRAFT_01259 at 93.812 kb on - strand, within H281DRAFT_01259 at 93.954 kb on + strand, within H281DRAFT_01259
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 91,174 - H281DRAFT_01256 0.17 +0.5 91,225 + H281DRAFT_01256 0.31 +2.2 91,226 - H281DRAFT_01256 0.31 -0.1 91,501 + -0.3 91,563 + +0.3 91,700 + +0.5 91,701 - +0.5 91,701 - +1.2 91,802 + H281DRAFT_01257 0.21 -0.9 92,115 - -1.5 92,737 - H281DRAFT_01258 0.60 -0.7 92,771 - H281DRAFT_01258 0.64 -0.4 93,135 + +0.6 93,169 + -0.9 93,174 - -0.5 93,388 + H281DRAFT_01259 0.11 -1.0 93,388 + H281DRAFT_01259 0.11 -2.2 93,389 - H281DRAFT_01259 0.11 -0.9 93,462 + H281DRAFT_01259 0.18 -0.1 93,574 + H281DRAFT_01259 0.28 +0.2 93,575 - H281DRAFT_01259 0.28 +0.2 93,812 - H281DRAFT_01259 0.50 -0.5 93,812 - H281DRAFT_01259 0.50 +0.2 93,954 + H281DRAFT_01259 0.64 +0.0
Or see this region's nucleotide sequence