Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01244 and H281DRAFT_01245 are separated by 17 nucleotides H281DRAFT_01245 and H281DRAFT_01246 are separated by 144 nucleotides H281DRAFT_01246 and H281DRAFT_01247 are separated by 99 nucleotides
H281DRAFT_01244: H281DRAFT_01244 - Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain, at 80,613 to 81,662
_01244
H281DRAFT_01245: H281DRAFT_01245 - arylsulfatase, at 81,680 to 83,638
_01245
H281DRAFT_01246: H281DRAFT_01246 - hypothetical protein, at 83,783 to 84,214
_01246
H281DRAFT_01247: H281DRAFT_01247 - esterase, PHB depolymerase family, at 84,314 to 85,417
_01247
Position (kb) 81
82
83
84 Strain fitness (log2 ratio) -2
-1
0
1 at 80.896 kb on + strand, within H281DRAFT_01244 at 81.372 kb on - strand, within H281DRAFT_01244 at 81.732 kb on + strand at 81.732 kb on + strand at 81.732 kb on + strand at 81.732 kb on + strand at 81.732 kb on + strand at 81.733 kb on - strand at 81.823 kb on - strand at 81.941 kb on - strand, within H281DRAFT_01245 at 82.002 kb on + strand, within H281DRAFT_01245 at 82.009 kb on - strand, within H281DRAFT_01245 at 82.020 kb on + strand, within H281DRAFT_01245 at 82.020 kb on + strand, within H281DRAFT_01245 at 82.227 kb on + strand, within H281DRAFT_01245 at 82.444 kb on - strand, within H281DRAFT_01245 at 82.515 kb on + strand, within H281DRAFT_01245 at 82.604 kb on - strand, within H281DRAFT_01245 at 82.605 kb on + strand, within H281DRAFT_01245 at 82.639 kb on - strand, within H281DRAFT_01245 at 82.792 kb on - strand, within H281DRAFT_01245 at 82.792 kb on - strand, within H281DRAFT_01245 at 82.804 kb on - strand, within H281DRAFT_01245 at 82.804 kb on - strand, within H281DRAFT_01245 at 82.864 kb on - strand, within H281DRAFT_01245 at 83.001 kb on + strand, within H281DRAFT_01245 at 83.083 kb on - strand, within H281DRAFT_01245 at 83.083 kb on - strand, within H281DRAFT_01245 at 83.155 kb on + strand, within H281DRAFT_01245 at 83.175 kb on + strand, within H281DRAFT_01245 at 83.175 kb on + strand, within H281DRAFT_01245 at 83.176 kb on - strand, within H281DRAFT_01245 at 83.176 kb on - strand, within H281DRAFT_01245 at 83.202 kb on - strand, within H281DRAFT_01245 at 83.202 kb on - strand, within H281DRAFT_01245 at 83.473 kb on - strand at 83.645 kb on - strand at 83.719 kb on + strand at 83.720 kb on - strand at 83.720 kb on - strand at 83.794 kb on + strand at 84.038 kb on - strand, within H281DRAFT_01246 at 84.385 kb on + strand at 84.387 kb on + strand at 84.388 kb on - strand at 84.578 kb on + strand, within H281DRAFT_01247 at 84.578 kb on + strand, within H281DRAFT_01247 at 84.578 kb on + strand, within H281DRAFT_01247 at 84.579 kb on - strand, within H281DRAFT_01247
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 80,896 + H281DRAFT_01244 0.27 +0.6 81,372 - H281DRAFT_01244 0.72 +0.1 81,732 + +1.2 81,732 + +1.1 81,732 + -0.1 81,732 + +0.3 81,732 + -0.4 81,733 - +1.1 81,823 - +0.5 81,941 - H281DRAFT_01245 0.13 -1.3 82,002 + H281DRAFT_01245 0.16 +0.4 82,009 - H281DRAFT_01245 0.17 +0.2 82,020 + H281DRAFT_01245 0.17 +0.4 82,020 + H281DRAFT_01245 0.17 -0.2 82,227 + H281DRAFT_01245 0.28 +0.1 82,444 - H281DRAFT_01245 0.39 +0.9 82,515 + H281DRAFT_01245 0.43 +0.4 82,604 - H281DRAFT_01245 0.47 -0.2 82,605 + H281DRAFT_01245 0.47 +0.8 82,639 - H281DRAFT_01245 0.49 -0.8 82,792 - H281DRAFT_01245 0.57 -0.4 82,792 - H281DRAFT_01245 0.57 +0.5 82,804 - H281DRAFT_01245 0.57 -1.6 82,804 - H281DRAFT_01245 0.57 +0.5 82,864 - H281DRAFT_01245 0.60 -0.1 83,001 + H281DRAFT_01245 0.67 +0.7 83,083 - H281DRAFT_01245 0.72 -0.8 83,083 - H281DRAFT_01245 0.72 +0.2 83,155 + H281DRAFT_01245 0.75 +0.4 83,175 + H281DRAFT_01245 0.76 -0.2 83,175 + H281DRAFT_01245 0.76 +0.4 83,176 - H281DRAFT_01245 0.76 +0.2 83,176 - H281DRAFT_01245 0.76 +1.2 83,202 - H281DRAFT_01245 0.78 +0.1 83,202 - H281DRAFT_01245 0.78 -0.7 83,473 - -0.2 83,645 - +1.6 83,719 + -0.0 83,720 - -1.4 83,720 - -0.3 83,794 + -0.1 84,038 - H281DRAFT_01246 0.59 -0.5 84,385 + -1.8 84,387 + +1.2 84,388 - +0.0 84,578 + H281DRAFT_01247 0.24 +0.4 84,578 + H281DRAFT_01247 0.24 -0.1 84,578 + H281DRAFT_01247 0.24 +0.4 84,579 - H281DRAFT_01247 0.24 -1.8
Or see this region's nucleotide sequence