Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01014 and H281DRAFT_01015 are separated by 96 nucleotides H281DRAFT_01015 and H281DRAFT_01016 are separated by 140 nucleotides H281DRAFT_01016 and H281DRAFT_01017 are separated by 76 nucleotides
H281DRAFT_01014: H281DRAFT_01014 - glutathione S-transferase, at 1,139,444 to 1,140,139
_01014
H281DRAFT_01015: H281DRAFT_01015 - uncharacterized peroxidase-related enzyme, at 1,140,236 to 1,140,781
_01015
H281DRAFT_01016: H281DRAFT_01016 - Nitroreductase, at 1,140,922 to 1,141,557
_01016
H281DRAFT_01017: H281DRAFT_01017 - putative redox protein, at 1,141,634 to 1,142,398
_01017
Position (kb) 1140
1141
1142 Strain fitness (log2 ratio) -1
0
1 at 1140.808 kb on + strand at 1141.109 kb on + strand, within H281DRAFT_01016 at 1141.354 kb on + strand, within H281DRAFT_01016 at 1141.381 kb on + strand, within H281DRAFT_01016 at 1141.488 kb on - strand, within H281DRAFT_01016 at 1142.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 1,140,808 + +0.2 1,141,109 + H281DRAFT_01016 0.29 +0.2 1,141,354 + H281DRAFT_01016 0.68 +1.3 1,141,381 + H281DRAFT_01016 0.72 +0.3 1,141,488 - H281DRAFT_01016 0.89 -0.7 1,142,508 - -0.6
Or see this region's nucleotide sequence