Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00592 and H281DRAFT_00593 are separated by 142 nucleotides H281DRAFT_00593 and H281DRAFT_00594 are separated by 135 nucleotides H281DRAFT_00594 and H281DRAFT_00595 are separated by 24 nucleotides
H281DRAFT_00592: H281DRAFT_00592 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 659,508 to 660,650
_00592
H281DRAFT_00593: H281DRAFT_00593 - ATP-binding cassette, subfamily F, member 3, at 660,793 to 662,742
_00593
H281DRAFT_00594: H281DRAFT_00594 - glutathione peroxidase, at 662,878 to 663,357
_00594
H281DRAFT_00595: H281DRAFT_00595 - cardiolipin synthase, at 663,382 to 664,848
_00595
Position (kb) 660
661
662
663 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 659.882 kb on - strand, within H281DRAFT_00592 at 659.891 kb on - strand, within H281DRAFT_00592 at 660.103 kb on - strand, within H281DRAFT_00592 at 660.103 kb on - strand, within H281DRAFT_00592 at 660.103 kb on - strand, within H281DRAFT_00592 at 660.238 kb on + strand, within H281DRAFT_00592 at 660.305 kb on - strand at 660.340 kb on + strand, within H281DRAFT_00592 at 660.488 kb on - strand, within H281DRAFT_00592 at 660.664 kb on - strand at 661.592 kb on + strand, within H281DRAFT_00593 at 661.778 kb on + strand, within H281DRAFT_00593 at 661.860 kb on + strand, within H281DRAFT_00593 at 661.860 kb on + strand, within H281DRAFT_00593 at 661.860 kb on + strand, within H281DRAFT_00593 at 661.861 kb on - strand, within H281DRAFT_00593 at 661.861 kb on - strand, within H281DRAFT_00593 at 661.958 kb on + strand, within H281DRAFT_00593 at 661.959 kb on - strand, within H281DRAFT_00593 at 661.959 kb on - strand, within H281DRAFT_00593 at 661.959 kb on - strand, within H281DRAFT_00593 at 662.376 kb on - strand, within H281DRAFT_00593 at 662.493 kb on + strand, within H281DRAFT_00593 at 662.493 kb on + strand, within H281DRAFT_00593 at 662.493 kb on + strand, within H281DRAFT_00593 at 662.496 kb on - strand, within H281DRAFT_00593 at 662.769 kb on - strand at 662.774 kb on - strand at 662.891 kb on - strand at 662.912 kb on + strand at 662.942 kb on - strand, within H281DRAFT_00594 at 662.971 kb on - strand, within H281DRAFT_00594 at 663.001 kb on + strand, within H281DRAFT_00594 at 663.023 kb on - strand, within H281DRAFT_00594 at 663.023 kb on - strand, within H281DRAFT_00594 at 663.023 kb on - strand, within H281DRAFT_00594 at 663.031 kb on + strand, within H281DRAFT_00594 at 663.031 kb on + strand, within H281DRAFT_00594 at 663.134 kb on - strand, within H281DRAFT_00594 at 663.202 kb on + strand, within H281DRAFT_00594 at 663.430 kb on + strand at 663.463 kb on + strand at 663.692 kb on + strand, within H281DRAFT_00595
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 659,882 - H281DRAFT_00592 0.33 +0.8 659,891 - H281DRAFT_00592 0.34 +0.3 660,103 - H281DRAFT_00592 0.52 +0.1 660,103 - H281DRAFT_00592 0.52 +1.4 660,103 - H281DRAFT_00592 0.52 +0.4 660,238 + H281DRAFT_00592 0.64 -0.1 660,305 - +2.1 660,340 + H281DRAFT_00592 0.73 -0.0 660,488 - H281DRAFT_00592 0.86 -3.3 660,664 - +0.6 661,592 + H281DRAFT_00593 0.41 -1.8 661,778 + H281DRAFT_00593 0.51 -0.2 661,860 + H281DRAFT_00593 0.55 -0.6 661,860 + H281DRAFT_00593 0.55 +1.9 661,860 + H281DRAFT_00593 0.55 +0.8 661,861 - H281DRAFT_00593 0.55 +1.8 661,861 - H281DRAFT_00593 0.55 +0.0 661,958 + H281DRAFT_00593 0.60 +0.0 661,959 - H281DRAFT_00593 0.60 +0.7 661,959 - H281DRAFT_00593 0.60 -0.7 661,959 - H281DRAFT_00593 0.60 +0.7 662,376 - H281DRAFT_00593 0.81 -0.5 662,493 + H281DRAFT_00593 0.87 -1.4 662,493 + H281DRAFT_00593 0.87 -0.0 662,493 + H281DRAFT_00593 0.87 -2.0 662,496 - H281DRAFT_00593 0.87 -1.7 662,769 - +0.1 662,774 - -2.8 662,891 - -0.7 662,912 + +0.8 662,942 - H281DRAFT_00594 0.13 -0.6 662,971 - H281DRAFT_00594 0.19 -0.4 663,001 + H281DRAFT_00594 0.26 -0.8 663,023 - H281DRAFT_00594 0.30 +0.6 663,023 - H281DRAFT_00594 0.30 -0.2 663,023 - H281DRAFT_00594 0.30 +1.0 663,031 + H281DRAFT_00594 0.32 +0.2 663,031 + H281DRAFT_00594 0.32 -0.3 663,134 - H281DRAFT_00594 0.53 +1.1 663,202 + H281DRAFT_00594 0.68 +0.6 663,430 + -3.1 663,463 + +0.9 663,692 + H281DRAFT_00595 0.21 +1.0
Or see this region's nucleotide sequence